fkpB:Gene Product(s): Difference between revisions

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!align=left {{table heading style}} |Synonyms
!align=left {{table heading style}} |Synonyms
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FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase)<ref name='LIB:Riley_2006'/>, B0028<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YaaD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, FkpB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, SlpA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
''FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase)<ref name='LIB:Riley_2006'/>, B0028<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YaaD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, FkpB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, SlpA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK0029, JW0026, slpA, yaaD, b0028''
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!align=left {{table heading style}} |Product description
!align=left {{table heading style}} |Product description
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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="F46aa164f00b2d"  class=" tableEdit GO_table_product dataTable"   
|- {{table_heading_style}}
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!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
!|Qualifier!!GO ID!!GO term name!!Reference!!Evidence Code!!with/from!!Aspect!!Notes!!Status
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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="R46aa1659be945"  class=" tableEdit Product_interactions_table dataTable"   
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!|Partner Type!!Partner!!Notes!!References!!Evidence
!|Partner Type!!Partner!!Notes!!References!!Evidence
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Protein
Protein
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[[hupA:Gene_Product(s)|hupA]]
hupA
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Protein
Protein
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[[rpsM:Gene_Product(s)|rpsM]]
rpsM
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Protein
Protein
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[[rplI:Gene_Product(s)|rplI]]
rplI
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Protein
Protein
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[[rpsA:Gene_Product(s)|rpsA]]
rpsA
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Protein
Protein
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[[rpsN:Gene_Product(s)|rpsN]]
rpsN
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Protein
Protein
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[[rpsP:Gene_Product(s)|rpsP]]
rpsP
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Protein
Protein
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[[yhbY:Gene_Product(s)|yhbY]]
yhbY
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Protein
Protein
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[[frmA:Gene_Product(s)|frmA]]
frmA
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Protein
Protein
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[[ebgA:Gene_Product(s)|ebgA]]
ebgA
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Protein
Protein
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[[ydhU:Gene_Product(s)|ydhU]]
ydhU
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Protein
Protein
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[[puuP:Gene_Product(s)|puuP]]
puuP
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Protein
Protein
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[[nuoI:Gene_Product(s)|nuoI]]
nuoI
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Protein
Protein
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[[eda:Gene_Product(s)|eda]]
eda
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Protein
Protein
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[[flgI:Gene_Product(s)|flgI]]
flgI
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PMID:19402753
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LCMS(ID Probability):99.6
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Protein
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ycgX
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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="C46a72c36512bd"  class=" tableEdit Product_localization_table"   
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!|Compartment!!Description!!Evidence!!Source!!Notes
!|Compartment!!Description!!Evidence!!Reference/Source!!Notes


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!align=left {{table heading style}} |Extinction coefficient
!align=left {{table heading style}} |Extinction coefficient
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1,490 (calc based on 1 Y, W, and C residues)
1,490 (calc based on 1 Y, 0 W, and 0 C residues)


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!|Type!!Residues!!Description!!Notes!!References
!|Type!!Residues!!Description!!Notes!!References
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View models at:
View models at:
* [http://dragon.bio.purdue.edu/ecolpredict2/localsearch/cgi-bin/search3.cgi?q=recA EcoliPredict]
* [http://www.proteinmodelportal.org/query/uniprot/P0AEM0 Protein Model Portal]
* [http://modbase.compbio.ucsf.edu/modbase-cgi/model_search.cgi?searchmode=default&displaymode=moddetail&searchproperties=ALL&searchvalue=recA&organism=562&organismtext= ModBase]
* [http://bioinf.cs.ucl.ac.uk/genome3d/read?uniprot_id=P0AEM0 PSI-PRED (P0AEM0)]
* [http://bioinf.cs.ucl.ac.uk/psipred/ PSI-PRED]
* [http://spock.genes.nig.ac.jp/~genome/cgi-bin/gkeytext.pl.cgi?A&QUERY1=P0AEM0 Genomes TO Protein (P0AEM0)] (GTOP)
* [http://www.ebi.ac.uk/msd-srv/pqs/ Protein Quaternary Structure] (PQS)
* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)


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{|   id="J46aa165cb80c6"  class=" tableEdit Gene_accessions_table"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="J46aa165cb80c6"  class=" tableEdit Gene_accessions_table"   
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!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
|-  
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[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])  
[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]])
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[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG11080-MONOMER EcoCyc:EG11080-MONOMER]
[http://www.ncbi.nlm.nih.gov/protein/16128022 GI:16128022]
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Escherichia coli str. K-12 substr. MG1655
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[[ASAP]]
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ASAP:ABE-0000101
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[http://www.pir.uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])
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[http://www.uniprot.org/uniprot/P0AEM0 UniProtKB/Swiss-Prot:P0AEM0]
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Escherichia coli str. K-12 substr. MG1655
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[[EcoCyc]]
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EcoCyc:EG11080
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG11080
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
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[http://www.ncbi.nlm.nih.gov/gene NCBI (Gene)] ([[NCBI (Gene)|EcoliWiki Page]])
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[http://www.ncbi.nlm.nih.gov/gene?term=944807 GeneID:944807]
|
Escherichia coli str. K-12 substr. MG1655
|-  
|-  
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[http://uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])
[[RegulonDB]]
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[http://www.uniprot.org/uniprot/P0AEM0 UniProt:P0AEM0]
RegulonDB:ECK120001068
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-  
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[http://pfam.sanger.ac.uk/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]])
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[http://pfam.janelia.org/protein/P0AEM0 Pfam:P0AEM0]
[http://www.ncbi.nlm.nig.gov/protein/Array GeneID:944807]
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Escherichia coli str. K-12 substr. MG1655
|-  
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[http://www.ncbi.nlm.nih.gov/RefSeq/ RefSeq] ([[RefSeq|EcoliWiki Page]])
[[EchoBASE]]
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[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NP_414569 RefSeq:NP_414569]
EchoBASE:EB1072
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


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!|Name!!URL!!Comments
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Latest revision as of 20:19, 17 February 2015

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

FkpB

Synonyms

FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase)[1], B0028[2][1], YaaD[2][1], FkpB[2][1], SlpA[2][1] , ECK0029, JW0026, slpA, yaaD, b0028

Product description

EG11080[2][3]

FKBP-type peptidyl-prolyl cis-trans isomerase[4]

EC number (for enzymes)
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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0003755

peptidyl-prolyl cis-trans isomerase activity

GOA:spec
GO_REF:0000003

IEA: Inferred from Electronic Annotation

EC:5.2.1.8

F

Seeded from EcoCyc (v14.0)

complete

GO:0003755

peptidyl-prolyl cis-trans isomerase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0697

F

Seeded from EcoCyc (v14.0)

complete

GO:0006457

protein folding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001179

P

Seeded from EcoCyc (v14.0)

complete

GO:0006457

protein folding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0697

P

Seeded from EcoCyc (v14.0)

complete

GO:0016853

isomerase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0413

F

Seeded from EcoCyc (v14.0)

complete

edit table

Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

rpsI

PMID:16606699[5]

Experiment(s):EBI-1135340

Protein

rplS

PMID:16606699[5]

Experiment(s):EBI-1135340

Protein

mreB

PMID:16606699[5]

Experiment(s):EBI-1135340

Protein

cheA

PMID:16606699[5]

Experiment(s):EBI-1135340

Protein

rpsD

PMID:16606699[5]

Experiment(s):EBI-1135340, EBI-1135340

Protein

hybE

PMID:16606699[5]

Experiment(s):EBI-1135340

Protein

rpsB

PMID:16606699[5]

Experiment(s):EBI-1135340

Protein

rpsN

PMID:16606699[5]

Experiment(s):EBI-1135340

Protein

ileS

PMID:16606699[5]

Experiment(s):EBI-1135340

Protein

rpoB

PMID:16606699[5]

Experiment(s):EBI-1135340

Protein

slyD

PMID:16606699[5]

Experiment(s):EBI-1135340

Protein

fliC

PMID:16606699[5]

Experiment(s):EBI-1135340

Protein

rplO

PMID:16606699[5]

Experiment(s):EBI-1135340

Protein

gltB

PMID:16606699[5]

Experiment(s):EBI-1135340

Protein

rpsJ

PMID:16606699[5]

Experiment(s):EBI-1135340

Protein

rplN

PMID:16606699[5]

Experiment(s):EBI-1135340

Protein

rplB

PMID:16606699[5]

Experiment(s):EBI-1135340

Protein

dnaJ

PMID:16606699[5]

Experiment(s):EBI-1135340

Protein

pdxA

PMID:16606699[5]

Experiment(s):EBI-1135340

Protein

greA

PMID:16606699[5]

Experiment(s):EBI-1135340

Protein

rplQ

PMID:16606699[5]

Experiment(s):EBI-1135340

Protein

ydcP

PMID:16606699[5]

Experiment(s):EBI-1135340

Protein

nrdI

PMID:16606699[5]

Experiment(s):EBI-1135340

Protein

rpoC

PMID:16606699[5]

Experiment(s):EBI-1135340

Protein

dnaK

PMID:16606699[5]

Experiment(s):EBI-1135340

Protein

rplC

PMID:16606699[5]

Experiment(s):EBI-1135340

Protein

sdhA

PMID:16606699[5]

Experiment(s):EBI-1135340

Protein

rpsL

PMID:16606699[5]

Experiment(s):EBI-1135340

Protein

rpsC

PMID:16606699[5]

Experiment(s):EBI-1135340

Protein

glpD

PMID:16606699[5]

Experiment(s):EBI-1135340

Protein

hupA

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

rpsM

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

rplI

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

rpsA

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

rpsN

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

rpsP

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

yhbY

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

frmA

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

ebgA

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

ydhU

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

puuP

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

nuoI

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

eda

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

flgI

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

ycgX

PMID:19402753[6]

LCMS(ID Probability):99.6

edit table


Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
edit table


Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MSESVQSNSA VLVHFTLKLD DGTTAESTRN NGKPALFRLG DASLSEGLEQ HLLGLKVGDK
TTFSLEPDAA FGVPSPDLIQ YFSRREFMDA GEPEIGAIML FTAMDGSEMP GVIREINGDS
ITVDFNHPLA GQTVHFDIEV LEIDPALEA
Length

149

Mol. Wt

16.08 kDa

pI

4.2 (calculated)

Extinction coefficient

1,490 (calc based on 1 Y, 0 W, and 0 C residues)

edit table


Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Initiator Methionine

1

Removed

UniProt:P0AEM0

Domain

1..141

PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase

PMID:19920124[7]

edit table

<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=fkpB taxon=562,83333 </beststructure>

Models

View models at:

edit table

Structure figures

Notes

Gene Product Resources

[back to top]


See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
edit table


Notes

Accessions in Other Databases

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16128022

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0000101

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0AEM0

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG11080

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11080

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:944807

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001068

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:944807

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1072

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

[back to top]


See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.00 5.01 5.02 5.03 5.04 5.05 5.06 5.07 5.08 5.09 5.10 5.11 5.12 5.13 5.14 5.15 5.16 5.17 5.18 5.19 5.20 5.21 5.22 5.23 5.24 5.25 5.26 5.27 5.28 5.29 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  6. ↑ 6.00 6.01 6.02 6.03 6.04 6.05 6.06 6.07 6.08 6.09 6.10 6.11 6.12 6.13 6.14 Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
  7. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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