Phage lambda orf-401:Gene Product(s): Difference between revisions

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|-
|-
!align=left {{table heading style}} |Standard name
!align=left {{table heading style}} |Standard name
||
||
orf-401  
orf-401
|-
|-
!align=left {{table heading style}} |Synonyms
!align=left {{table heading style}} |Synonyms
||
||
orf-401, lambdap27  
orf-401, lambdap27
|-
|-
!align=left {{table heading style}} |Product description
!align=left {{table heading style}} |Product description
||
||
Tail fiber protein  
Tail fiber protein, stf <ref name='PMID:1439823'/>
|-
|-
!align=left {{table heading style}} |EC number (for enzymes)
!align=left {{table heading style}} |EC number (for enzymes)
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<protect><!--Nomenclature_notes--></protect>
<protect><!--Nomenclature_notes--></protect>
===Notes===
===Notes===
 
Classic "wild-type" phage Lambda is known as λPaPa.  However, this particular phage as a frameshift mutation in the stf gene.  The frameshift creates 2 orfs: orf-401 and [[Phage_lambda_orf-314:Gene_Product(s)|orf-314]].  Phage Lambda without the frameshift, and thus with the intact stf gene, is referred to as Ur-λ.  <ref name='PMID:1439823'/>


==Function==
==Function==
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!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
!|Qualifier!!GO ID!!GO term name!!Reference!!Evidence Code!!with/from!!Aspect!!Notes!!Status
|-
|
 
|
GO:0098024
|
virus tail, fiber
|
PMID:1439823
|
IMP: Inferred from Mutant Phenotype
|
 
|
C
|
Phage lambda wt (LambdaPaPa) vs Ur-Lambda.
|
complete


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<span id="Interactions"></span><big>'''Interactions'''</big>
<span id="Interactions"></span><big>'''Interactions '''</big>
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!|Partner Type!!Partner!!Notes!!References!!Evidence


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<!--Function_notes-->
===Notes===
===Notes===


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!|Compartment!!Description!!Evidence!!Reference/Source!!Notes


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|-
!align=left {{table heading style}} |Name
||


|-
|-
!align=left {{table heading style}} |Sequence
!align=left {{table heading style}} |Sequence
||
||
<pre>MAVKISGVLK DGTGKPVQNC TIQLKARRNS TTVVVNTVGS ENPDEAGRYS MDVEYGQYSV
<pre>MAVKISGVLK DGTGKPVQNC TIQLKARRNS TTVVVNTVGS ENPDEAGRYS MDVEYGQYSV
ILQVDGFPPS HAGTITVYED SQPGTLNDFL CAMTEDDARP EVLRRLELMV EEVARNASVV
ILQVDGFPPS HAGTITVYED SQPGTLNDFL CAMTEDDARP EVLRRLELMV EEVARNASVV
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ASKEAAKSSE TNASSSAGRA ASSATAAENS ARAAKTSETN ARSSETAAER SASAAADAKT
ASKEAAKSSE TNASSSAGRA ASSATAAENS ARAAKTSETN ARSSETAAER SASAAADAKT
AAAGSASTAS TKATEAAGSA VSASQSKSAA EAAAIRAKNS AKRAEDIASA VALEDADTTR
AAAGSASTAS TKATEAAGSA VSASQSKSAA EAAAIRAKNS AKRAEDIASA VALEDADTTR
KGIVQLSSAT NSTSETLAAT PKAVKVVMDE TNRKAHWTVR H</pre>  
KGIVQLSSAT NSTSETLAAT PKAVKVVMDE TNRKAHWTVR H</pre>
|-
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!align=left {{table heading style}} |Length
!align=left {{table heading style}} |Length
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11,460 - 11,710 (calc based on 4 Y, 1 W, and 2 C residues)
11,460 - 11,710 (calc based on 4 Y, 1 W, and 2 C residues)


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</table>


<span id="Structure"></span><big>'''Structure'''</big>
<table><tr valign='top'><td>
<span id='Structure'></span><big>'''Structure'''</big><br />
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|-
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!align=left {{table heading style}} |Structures
!align=left {{table heading style}} |Structures
||
<beststructure>
gene=Phage_lambda_orf-401
taxon=10710
</beststructure>
|-
|-
!align=left {{table heading style}} |Models
!align=left {{table heading style}} |Models
||
View models at:
* [http://bioinf.cs.ucl.ac.uk/psipred/ PSI-PRED]
* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)


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==== Structure figures ====
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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===Notes===
===Notes===


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!|Database!!Accession!!Notes
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[http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene Genbank] ([[Genbank|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=protein&cmd=&term=NP_040602.1 Genbank:NP_040602.1]
|


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Latest revision as of 20:19, 17 February 2015

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

orf-401

Synonyms

orf-401, lambdap27

Product description

Tail fiber protein, stf [1]

EC number (for enzymes)


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Notes

Classic "wild-type" phage Lambda is known as λPaPa. However, this particular phage as a frameshift mutation in the stf gene. The frameshift creates 2 orfs: orf-401 and orf-314. Phage Lambda without the frameshift, and thus with the intact stf gene, is referred to as Ur-λ. [1]

Function

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Gene Ontology See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0098024

virus tail, fiber

PMID:1439823[1]

IMP: Inferred from Mutant Phenotype

C

Phage lambda wt (LambdaPaPa) vs Ur-Lambda.

complete

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Interactions

<protect> See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence 
MAVKISGVLK DGTGKPVQNC TIQLKARRNS TTVVVNTVGS ENPDEAGRYS MDVEYGQYSV
ILQVDGFPPS HAGTITVYED SQPGTLNDFL CAMTEDDARP EVLRRLELMV EEVARNASVV
AQSTADAKKS AGDASASAAQ VAALVTDATD SARAASTSAG QAASSAQEAS SGAEAASAKA
TEAEKSAAAA ESSKNAAATS AGAAKTSETN AAASQQSAAT SASTAATKAS EAATSARDAV
ASKEAAKSSE TNASSSAGRA ASSATAAENS ARAAKTSETN ARSSETAAER SASAAADAKT
AAAGSASTAS TKATEAAGSA VSASQSKSAA EAAAIRAKNS AKRAEDIASA VALEDADTTR
KGIVQLSSAT NSTSETLAAT PKAVKVVMDE TNRKAHWTVR H
Length

401

Mol. Wt

39.882 kDa

pI

5.6 (calculated)

Extinction coefficient

11,460 - 11,710 (calc based on 4 Y, 1 W, and 2 C residues)

edit table

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Domains/Motifs/Modification Sites

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Type Residues Description Notes References
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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=Phage_lambda_orf-401 taxon=10710 </beststructure>

Models

View models at:

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Structure figures

Notes

Gene Product Resources

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Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes
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Notes

Links

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Name URL Comments
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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Hendrix, RW & Duda, RL (1992) Bacteriophage lambda PaPa: not the mother of all lambda phages. Science 258 1145-8 PubMed

Categories

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