Phage lambda E:Gene Product(s): Difference between revisions

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!align=left {{table heading style}} |Product description
!align=left {{table heading style}} |Product description
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capsid component
main capsid protein <ref name='LIB:Lambda_II'/>
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!align=left {{table heading style}} |EC number (for enzymes)
!align=left {{table heading style}} |EC number (for enzymes)
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{|   class=" tableEdit GO_table_product dataTable"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  class=" tableEdit GO_table_product dataTable"   
|- {{table_heading_style}}
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!|Qualifier!!GO ID!!GO term name!!Reference!!Evidence Code!!with/from!!Aspect!!Notes!!Status
!|Qualifier!!GO ID!!GO term name!!Reference!!Evidence Code!!with/from!!Aspect!!Notes!!Status
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GO:0098017
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viral capsid, major subunit
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PMID:4923016
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IMP: Inferred from Mutant Phenotype
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C
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complete
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GO:0019030
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icosahedral viral capsid
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PMID:4509659
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IDA: Inferred from Direct Assay
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C
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complete


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!|Partner Type!!Partner!!Notes!!References!!Evidence
!|Partner Type!!Partner!!Notes!!References!!Evidence
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!|Compartment!!Description!!Evidence!!Source!!Notes
!|Compartment!!Description!!Evidence!!Reference/Source!!Notes


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!align=left {{table heading style}} |Sequence
!align=left {{table heading style}} |Sequence
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<pre>MSMYTTAQLL AANEQKFKFD PLFLRLFFRE SYPFTTEKVY LSQIPGLVNM ALYVSPIVSG
<pre>MSMYTTAQLL AANEQKFKFD PLFLRLFFRE SYPFTTEKVY LSQIPGLVNM ALYVSPIVSG
EVIRSRGGST SEFTPGYVKP KHEVNPQMTL RRLPDEDPQN LADPAYRRRR IIMQNMRDEE
EVIRSRGGST SEFTPGYVKP KHEVNPQMTL RRLPDEDPQN LADPAYRRRR IIMQNMRDEE
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TDDIEAYALN ASGVVNIIVF DPKGWALFRS FKAVKEKLDT RRGSNSELET AVKDLGKAVS
TDDIEAYALN ASGVVNIIVF DPKGWALFRS FKAVKEKLDT RRGSNSELET AVKDLGKAVS
YKGMYGDVAI VVYSGQYVEN GVKKNFLPDN TMVLGNTQAR GLRTYGCIQD ADAQREGINA
YKGMYGDVAI VVYSGQYVEN GVKKNFLPDN TMVLGNTQAR GLRTYGCIQD ADAQREGINA
SARYPKNWVT TGDPAREFTM IQSAPLMLLA DPDEFVSVQL A</pre>  
SARYPKNWVT TGDPAREFTM IQSAPLMLLA DPDEFVSVQL A</pre>
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!align=left {{table heading style}} |Length
!align=left {{table heading style}} |Length
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341
|-
|-
!align=left {{table heading style}} |Mol. Wt
!align=left {{table heading style}} |Mol. Wt
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38.188 kDa
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!align=left {{table heading style}} |pI
!align=left {{table heading style}} |pI
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5.2 (calculated)
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!align=left {{table heading style}} |Extinction coefficient
!align=left {{table heading style}} |Extinction coefficient
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38,850 - 38,975 (calc based on 15 Y, 3 W, and 1 C residues)


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{|   class=" tableEdit Product_motif_table dataTable"   
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!|Type!!Residues!!Description!!Notes!!References
!|Type!!Residues!!Description!!Notes!!References


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View models at:
View models at:
* [http://dragon.bio.purdue.edu/ecolpredict2/localsearch/cgi-bin/search3.cgi?q=recA EcoliPredict]
* [http://modbase.compbio.ucsf.edu/modbase-cgi/model_search.cgi?searchmode=default&displaymode=moddetail&searchproperties=ALL&searchvalue=recA&organism=562&organismtext= ModBase]
* [http://bioinf.cs.ucl.ac.uk/psipred/ PSI-PRED]
* [http://bioinf.cs.ucl.ac.uk/psipred/ PSI-PRED]
* [http://www.ebi.ac.uk/msd-srv/pqs/ Protein Quaternary Structure] (PQS)
* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)
* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)


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!|Resource type!!Source!!Notes/Reference
!|Resource type!!Source!!Notes/Reference


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!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene Genbank] ([[Genbank|EcoliWiki Page]])
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[http://www.ncbi.nlm.nih.gov/sites/entrez?db=protein&cmd=&term=NP_040587.1 Genbank:NP_040587.1]
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!|Name!!URL!!Comments


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Latest revision as of 20:15, 17 February 2015

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

E

Synonyms

E, lambdap08

Product description

main capsid protein [1]

EC number (for enzymes)


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See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Notes

Function

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Gene Ontology See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0098017

viral capsid, major subunit

PMID:4923016[2]

IMP: Inferred from Mutant Phenotype

C

complete

GO:0019030

icosahedral viral capsid

PMID:4509659[3]

IDA: Inferred from Direct Assay

C

complete

edit table

See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Interactions

<protect> See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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See Help:Product_localization for how to add or edit information in this section of EcoliWiki.


Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence 
MSMYTTAQLL AANEQKFKFD PLFLRLFFRE SYPFTTEKVY LSQIPGLVNM ALYVSPIVSG
EVIRSRGGST SEFTPGYVKP KHEVNPQMTL RRLPDEDPQN LADPAYRRRR IIMQNMRDEE
LAIAQVEEMQ AVSAVLKGKY TMTGEAFDPV EVDMGRSEEN NITQSGGTEW SKRDKSTYDP
TDDIEAYALN ASGVVNIIVF DPKGWALFRS FKAVKEKLDT RRGSNSELET AVKDLGKAVS
YKGMYGDVAI VVYSGQYVEN GVKKNFLPDN TMVLGNTQAR GLRTYGCIQD ADAQREGINA
SARYPKNWVT TGDPAREFTM IQSAPLMLLA DPDEFVSVQL A
Length

341

Mol. Wt

38.188 kDa

pI

5.2 (calculated)

Extinction coefficient

38,850 - 38,975 (calc based on 15 Y, 3 W, and 1 C residues)

edit table

See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References
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See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=Phage_lambda_E taxon=10710 </beststructure>

Models

View models at:

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See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structure figures

Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes
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See Help:Product_accessions for help entering or editing information in this section of EcoliWiki.

Notes

Links

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Name URL Comments
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See Help:Links_table for how to enter or edit information in this section of EcoliWiki.



References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ Edited by Roger W. Hendrix, Jeffrey W. Roberts, Franklin W. Stahl and Robert A. Weisberg (1983) Lambda II (Cold Spring Harbor Laboratory, Cold Spring Harbor, NY)
  2. ↑ Casjens, S et al. (1970) Morphological proteins of phage lambda: identification of the major head protein as the product of gene E. Virology 42 496-507 PubMed
  3. ↑ Kaiser, D & Masuda, T (1973) In vitro assembly of bacteriophage Lambda heads. Proc. Natl. Acad. Sci. U.S.A. 70 260-4 PubMed

Categories

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