Phage lambda nu1:Gene: Difference between revisions

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|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Interactions | Genetic Interactions]]
|{{Sub}}[[#Genetic Resources  |Genetic Resources]]
|{{Sub}}[[#Genetic Resources  |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
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|-
|-
!align=left {{table_heading_style}} |Standard name
!align=left {{table_heading_style}} |Standard name
||
||
''Phage lambda nu1''  
''Phage lambda nu1''
|-
|-
!align=left {{table_heading_style}} |Mnemonic
!align=left {{table_heading_style}} |Mnemonic
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''nu1, lambdap01''
''nu1, lambdap01''


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|- {{table_heading_style}}
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!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
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NC_001416
NC_001416
|
|
 
|
|
NC_001416: 191..736<br />{{GBrowseFigureByCoord|191|736|bacteriophage_lambda|NC_001416}}
NC_001416: 191..736<br />{{GBrowseFigureByCoord|191|736|bacteriophage_lambda|NC_001416}}
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{{GBrowseFastaLink|bacteriophage_lambda|NC_001416|191|736|FASTA Dump}}  
{{GBrowseFastaLink|bacteriophage_lambda|NC_001416|191|736|FASTA Dump}}  


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|- {{table_heading_style}}
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!|Feature type!!Location!!Description
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes
|-
|
Coding Start (SO:0000323)
|
Phage lambda
|
bp 191
|
Edman degradation
|
Tomka and Catalano (1993) J. Biol. Chem. 268: 3056-3065.
|
gpNu1 end established by N-terminal sequencing. 
|-
|
encodes helix-turn-helix motif
|
Phage lambda
|
bp 203-262 encode helix-turn-helix DNA binding motif
|
NMR structure
|
deBeer, et al. (2002) Mol. Cell 9:305-315
|
|-
|
encodes wing
|
Phage lambda
|
bp 280-307 encode wing of winged helix-turn-helix DNA binding motif.
|
NMR structure
|
deBeer et al. (2002) Mol. Cell 9:305-315
 
Hwang and Feiss (1997) Virology 231:524-535
|
Mutations affecting gpNu1 wing residue lysine-35 alter the strength and specificity of holoterminase interactions with DNA.


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===Notes===
===Notes===


==Genetic Interactions==
{{BacktoTop}}
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===Notes===


==Genetic Resources==
==Genetic Resources==
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Latest revision as of 20:54, 19 September 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Sequence Features Alleles and Phenotypes Genetic Interactions Genetic Resources Accessions Links References Suggestions

Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

Phage lambda nu1

Mnemonic
Synonyms

nu1, lambdap01

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Notes

Location(s) and DNA Sequence

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

NC_001416

NC_001416: 191..736
gbrowse_img.php?coord=191..736&genome=bacteriophage_lambda&name=NC_001416&trackset=0&width=300&.png

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes

Coding Start (SO:0000323)

Phage lambda

bp 191

Edman degradation

Tomka and Catalano (1993) J. Biol. Chem. 268: 3056-3065.

gpNu1 end established by N-terminal sequencing.

encodes helix-turn-helix motif

Phage lambda

bp 203-262 encode helix-turn-helix DNA binding motif

NMR structure

deBeer, et al. (2002) Mol. Cell 9:305-315

encodes wing

Phage lambda

bp 280-307 encode wing of winged helix-turn-helix DNA binding motif.

NMR structure

deBeer et al. (2002) Mol. Cell 9:305-315

Hwang and Feiss (1997) Virology 231:524-535

Mutations affecting gpNu1 wing residue lysine-35 alter the strength and specificity of holoterminase interactions with DNA.

edit table

See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments
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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference
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See Help:Gene_resources for help entering information into the Genetic Resources table.

Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes
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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Notes

Links

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Name URL Comments
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<protect>

References

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See Help:References for how to manage references in EcoliWiki.


Categories

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