Phage lambda nu1:Gene: Difference between revisions

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{{Tab|Quickview|Phage lambda nu1}}{{Tab On|Gene|Phage lambda nu1}}{{Tab|Gene Product(s)|Phage lambda nu1}}{{Tab|Expression|Phage lambda nu1}}{{Tab|Evolution|Phage lambda nu1}}{{Tab|On One Page|Phage lambda nu1}}{{TabsBottom}}
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|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Interactions | Genetic Interactions]]
|{{Sub}}[[#Genetic Resources  |Genetic Resources]]
|{{Sub}}[[#Genetic Resources  |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
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</noinclude><protect>
</noinclude><protect>
==Nomenclature==
==Nomenclature==
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{|  class=" tableEdit Gene_nomenclature_table" 
 
|-
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!{{table_heading_style}} |Standard name
!align=left {{table_heading_style}} |Standard name
|
||
''Phage lambda nu1''
''Phage lambda nu1''
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''Phage lambda nu1''  
|-
|-
!{{table_heading_style}} |Mnemonic
!align=left {{table_heading_style}} |Mnemonic
|
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|-
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!{{table_heading_style}} |Synonyms
!align=left {{table_heading_style}} |Synonyms
|
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''nu1, lambdap01''
''nu1, lambdap01''
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''nu1, lambdap01''
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==Location(s) and DNA Sequence==
==Location(s) and DNA Sequence==
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<protect>
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!Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
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NC_001416
NC_001416
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&nbsp;
 
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NC_001416: 191..736<br />{{GBrowseFigureByCoord|0|1736|bacteriophage_lambda|NC_001416}}  
NC_001416: 191..736<br />{{GBrowseFigureByCoord|191|736|bacteriophage_lambda|NC_001416}}
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*[http://dimer.tamu.edu/cgi-bin/gb/gbrowse/bacteriophage_lambda/?q=NC_001416:0..1736 GBrowse(bacteriophage_lambda)]
{{GBrowseLink|bacteriophage_lambda|NC_001416|191|736|Gbrowse (Bacteriophage lambda)}}
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*[http://dimer.tamu.edu/cgi-bin/gb/gbrowse/bacteriophage_lambda/?plugin=FastaDumper&name=NC_001416:191..736&plugin_action=Go FASTA Dump]
{{GBrowseFastaLink|bacteriophage_lambda|NC_001416|191|736|FASTA Dump}}  
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NC_001416
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79..I46b168e66a322&page=103636&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_location_table edit table]</span> || || || ||
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&nbsp;
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NC_001416: 191..736<br />{{GBrowseFigureByCoord|0|1736|bacteriophage_lambda|NC_001416}}  
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*[http://dimer.tamu.edu/cgi-bin/gb/gbrowse/bacteriophage_lambda/?q=NC_001416:0..1736 GBrowse(bacteriophage_lambda)]
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*[http://dimer.tamu.edu/cgi-bin/gb/gbrowse/bacteriophage_lambda/?plugin=FastaDumper&name=NC_001416:191..736&plugin_action=Go FASTA Dump]
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==Sequence Features==
==Sequence Features==
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|- {{table_heading_style}}
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!Feature type!!Location!!Description
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes
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|
Coding Start (SO:0000323)
|
Phage lambda
|
bp 191
|
Edman degradation
|
Tomka and Catalano (1993) J. Biol. Chem. 268: 3056-3065.
|
gpNu1 end established by N-terminal sequencing. 
|-
|
encodes helix-turn-helix motif
|
Phage lambda
|
bp 203-262 encode helix-turn-helix DNA binding motif
|
NMR structure
|
deBeer, et al. (2002) Mol. Cell 9:305-315
|
|-
|
encodes wing
|
Phage lambda
|
bp 280-307 encode wing of winged helix-turn-helix DNA binding motif.
|
NMR structure
|
deBeer et al. (2002) Mol. Cell 9:305-315
 
Hwang and Feiss (1997) Virology 231:524-535
|
Mutations affecting gpNu1 wing residue lysine-35 alter the strength and specificity of holoterminase interactions with DNA.
 
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==Alleles and Phenotypes==
==Alleles and Phenotypes==
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!Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!CGSC Mutation ID #
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
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{{Gene_alleles_help}}
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===Notes===
===Notes===


==Genetic Interactions==
{{BacktoTop}}
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===Notes===


==Genetic Resources==
==Genetic Resources==
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==Accessions in Other Databases==
==Accessions in Other Databases==
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
|-
 
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[http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene Genbank] ([[Genbank|EcoliWiki Page]])
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79..D46b168e9ab044&page=103636&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table]</span> || ||
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[http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&cmd=&term=2703523 Genbank:2703523] 
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[http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene Genbank] ([[Genbank|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&cmd=&term=2703523 Genbank:2703523] 
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==Links==
==Links==
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==References==
==References==
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<references/>
<references />
__NOTOC__
__NOTOC__
[[Category:Gene List:Phage lambda]]</protect></noinclude>
===Categories===
[[Category:Gene List:Phage lambda]]

Latest revision as of 20:54, 19 September 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Sequence Features Alleles and Phenotypes Genetic Interactions Genetic Resources Accessions Links References Suggestions

Nomenclature

[back to top]


See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

Phage lambda nu1

Mnemonic
Synonyms

nu1, lambdap01

edit table

See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Notes

Location(s) and DNA Sequence

[back to top]


See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

NC_001416

NC_001416: 191..736
gbrowse_img.php?coord=191..736&genome=bacteriophage_lambda&name=NC_001416&trackset=0&width=300&.png

edit table

See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Notes

Sequence Features

[back to top]


See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes

Coding Start (SO:0000323)

Phage lambda

bp 191

Edman degradation

Tomka and Catalano (1993) J. Biol. Chem. 268: 3056-3065.

gpNu1 end established by N-terminal sequencing.

encodes helix-turn-helix motif

Phage lambda

bp 203-262 encode helix-turn-helix DNA binding motif

NMR structure

deBeer, et al. (2002) Mol. Cell 9:305-315

encodes wing

Phage lambda

bp 280-307 encode wing of winged helix-turn-helix DNA binding motif.

NMR structure

deBeer et al. (2002) Mol. Cell 9:305-315

Hwang and Feiss (1997) Virology 231:524-535

Mutations affecting gpNu1 wing residue lysine-35 alter the strength and specificity of holoterminase interactions with DNA.

edit table

See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments
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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
edit table


Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference
edit table

See Help:Gene_resources for help entering information into the Genetic Resources table.

Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes
edit table

See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Notes

Links

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Name URL Comments
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See Help:Links_table for how to enter or edit information in this section of EcoliWiki.

<protect>

References

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See Help:References for how to manage references in EcoliWiki.


Categories

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