EcoliWiki:About: Difference between revisions
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'''EcoliWiki''', a component of [[PortEco]], is a wiki-based system for finding, editing, and adding information about ''E. coli'' K-12 and other model organism strains of ''E. coli''. EcoliWiki is being constructed to include information about bacteriophage, plasmids, and mobile genetic elements. | |||
EcoliWiki is supported by NIGMS U24GM088849, and was previously supported by NIGMS U24GM077905. | |||
==Purpose & Aims== | |||
The purpose of EcoliWiki is to provide a community-centered website for the annotation of all non-pathogenic strains of ''E. coli.'' Information should be easily accessible and correct, and users have the right to edit any information they feel is incorrect. | |||
==Content== | |||
Most of the ''E. coli'' information was initially seeded with a subset of information from parsing [[EcoCyc]] data dumps. For phage λ and the F plasmid, [[Genbank]] accessions were converted to [http://www.sanger.ac.uk/Software/formats/GFF/ GFF], which was parsed into the appropriate tables. Other sources of content include: | |||
* user additions | |||
* monthly addition of annotations from [[EcoCyc]] | |||
* structural data from the [[PDB]] | |||
* domains and motif information from [[InterPro]] | |||
* various databases including [[EcoGene]], [[RegulonDB]], [[Genbank]], [[GenoBase]], [[ASAP]] | |||
* many many scientific papers | |||
==Statistics== | |||
Ecoliwiki is run off of [http://www.mediawiki.org Mediawiki] version {{CURRENTVERSION}} and currently has {{NUMBEROFPAGES}} pages. You can view other statistics on [[Special:Statistics]]. | |||
===Web Services/API=== | |||
EcoliWiki provides REST web services as part of the PortEco Web Services infrastructure. | |||
* keyword - currently searches based on a single keyword | |||
* gene - prototype to extract gene details from the wiki | |||
* is_edited - shows numbers of human revisions to EcoliWiki pages. | |||
For more detail about the EcoliWiki web services, see [[Help:Web Services]]. | |||
==References== | |||
<references/> | |||
Latest revision as of 17:21, 20 August 2013
This page or section needs to be edited. Please help by editing this page to add your revisions or additions.
EcoliWiki, a component of PortEco, is a wiki-based system for finding, editing, and adding information about E. coli K-12 and other model organism strains of E. coli. EcoliWiki is being constructed to include information about bacteriophage, plasmids, and mobile genetic elements.
EcoliWiki is supported by NIGMS U24GM088849, and was previously supported by NIGMS U24GM077905.
Purpose & Aims
The purpose of EcoliWiki is to provide a community-centered website for the annotation of all non-pathogenic strains of E. coli. Information should be easily accessible and correct, and users have the right to edit any information they feel is incorrect.
Content
Most of the E. coli information was initially seeded with a subset of information from parsing EcoCyc data dumps. For phage λ and the F plasmid, Genbank accessions were converted to GFF, which was parsed into the appropriate tables. Other sources of content include:
- user additions
- monthly addition of annotations from EcoCyc
- structural data from the PDB
- domains and motif information from InterPro
- various databases including EcoGene, RegulonDB, Genbank, GenoBase, ASAP
- many many scientific papers
Statistics
Ecoliwiki is run off of Mediawiki version 1.43.11 and currently has 167,294 pages. You can view other statistics on Special:Statistics.
Web Services/API
EcoliWiki provides REST web services as part of the PortEco Web Services infrastructure.
- keyword - currently searches based on a single keyword
- gene - prototype to extract gene details from the wiki
- is_edited - shows numbers of human revisions to EcoliWiki pages.
For more detail about the EcoliWiki web services, see Help:Web Services.