yjbH:Quickview: Difference between revisions

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{|   id="U49b03334608f8"  class=" tableEdit New_Quickview_Table" 
 
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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[yjbH:Gene|''yjbH]]'' (synonyms: ''ECK4021, b4029, JW3989'')<ref name='LIB:Riley_2006'/>
''yjbH''
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[yjbH:Gene_Product(s)|YjbH product]]<ref name='LIB:Riley_2006'/>: predicted porin product, B4029 product
''ECK4021, b4029, JW3989''<ref name='LIB:Riley_2006'/>, JW3989''
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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conserved protein, putative lipoprotein and/or outer membrane porin<ref name='LIB:EcoCyc10.6'/> predicted porin<ref name='LIB:EcoCyc11.1'/>  
conserved protein, putative lipoprotein and/or outer membrane porin<ref name='LIB:EcoCyc10.6'/>; predicted porin<ref name='LIB:EcoCyc11.1'/>


Extracellular polysaccharide production<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
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''predicted porin<ref name='LIB:Riley_2006'/>, B4029<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YjbH<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK4021, JW3989, b4029''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:yjbF|yjbF]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:Txn_unit:yjbEFGH|yjbEFGH]]<ref name='LIB:EcoCyc11.1'/>  
transcription unit(s): [[:Category:Txn_unit:yjbF|yjbF]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:Txn_unit:yjbEFGH|yjbEFGH]]<ref name='LIB:EcoCyc11.1'/>  
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!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=yjbH&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG11926]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120001854&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=yjbH&loc=MG1655%3A4235657..4237753,W3110%3A4241224..4243320,REL606%3A4216566..4218662,DH10B%3A4335353..4337449,BW2952%3A4125337..4127433]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=4125337&end=4127433&gene=yjbH&aa=mkkrhllsllalgistacygetypapigpsqsdfggvgllqtptarmaregelslnyrdndqyryysasvqlfpwlettlrytdvrtrqyssveafsgdqtykdkafdlklrlweesywlpqvavgardiggtglfdaeylvaskawgpfdftlglgwgylgtsgnvknplcsasdkycyrdnsykqagsidgsqmfhgpaslfggveyqtpwqplrlkleyegnnyqqdfagkleqkskfnvgaiyrvtdwadvnlsyergntfmfgvtlrtnfndlrpsyndnarpqyqpqpqdailqhsvvanqltllkynagladpqiqakgdtlyvtgeqvkyrdsregiiranrivmndlpdgiktiritenrlnmpqvttetdvaslknhlageplghettlaqkrvepvvpqsteqgwyidksrfdfhidpvlnqsvggpenfymyqlgvmgtadlwltdhllttgslfanlannydkfnytnppqdshlprvrthvreyvqndvyvnnlqanyfqhlgngfygqvyggyletmfggagaevlyrpldsnwafgldanyvkqrdwrsakdmmkftdysvktghltaywtpsfaqdvlvkasvgqylagdkggtleiakrfdsgvvvggyatitnvskeeygegdftkgvyvsvpldlfssgptrsraaigwtpltrdggqqlgrkfqlydmtsdrsvnfr]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=yjbH+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=yjbH]]&nbsp;&nbsp;
 
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===Notes===
===Notes===
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Overexpression of the yjbEFGH operon alters colony morphology and leads to production of a novel extracellular polysaccharide (Ferrieres, 2007). yjbH and gfcD are paralogs. YjbH  has both type II (18 aa) and (somewhat better) type I (21 aa) signal peptide predictions by LipoP. YjbH is not likely to be a lipoprotein because the lipobox Cys is poorly conserved.<ref name='LIB:EcoGene'/>




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==References==
==References==
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Latest revision as of 21:56, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

yjbH

Gene Synonym(s)

ECK4021, b4029, JW3989[1], JW3989

Product Desc.

conserved protein, putative lipoprotein and/or outer membrane porin[2]; predicted porin[3]

Extracellular polysaccharide production[4]

Product Synonyms(s)

predicted porin[1], B4029[2][1], YjbH[2][1] , ECK4021, JW3989, b4029

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): yjbF[2], yjbEFGH[3]

Regulation/Activity
Quick Links



        

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Notes

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Overexpression of the yjbEFGH operon alters colony morphology and leads to production of a novel extracellular polysaccharide (Ferrieres, 2007). yjbH and gfcD are paralogs. YjbH has both type II (18 aa) and (somewhat better) type I (21 aa) signal peptide predictions by LipoP. YjbH is not likely to be a lipoprotein because the lipobox Cys is poorly conserved.[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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