thiC:Quickview: Difference between revisions

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{|   id="I49b02676db721" class=" tableEdit New_Quickview_Table"


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!align=left {{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[thiC:Gene|''thiC]]'' (synonyms: ''ECK3986, b3994, JW3958'')<ref name='LIB:Riley_2006'/>
''thiC''
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!align=left {{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[thiC:Gene_Product(s)|ThiC product]]<ref name='LIB:Riley_2006'/>: thiamin (pyrimidine moiety) biosynthesis protein product, B3994 product
''ECK3986, b3994, JW3958''<ref name='LIB:Riley_2006'/>, JW3958''
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!align=left {{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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thiamin biosynthesis protein ThiC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>  
thiamin biosynthesis protein ThiC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


Hydroxymethylpyrimidine synthesis, for thiamine biosynthesis<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Product Synonyms(s)
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''thiamin (pyrimidine moiety) biosynthesis protein<ref name='LIB:Riley_2006'/>, B3994<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, ThiC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK3986, JW3958, b3994''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:thiCEFSGH|thiCEFSGH]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:thiCEFSGH|thiCEFSGH]]<ref name='LIB:EcoCyc10.6'/>  
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=thiC&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG11585]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120001535&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=thiC&loc=MG1655%3A4194122..4192227,W3110%3A3440582..3442477,REL606%3A4175710..4173815,DH10B%3A4293818..4291923,BW2952%3A4081907..4083802]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=4081907&end=4083802&gene=thiC&aa=msatkltrreqraraqhfidtlegtafpnskriyitgthpgvrvpmreiqlsptliggskeqpqyeeneaipvydtsgpygdpqiainvqqglaklrqpwidargdteeltvrssdytkarladdgldelrfsgvltpkrakagrrvtqlhyarqgiitpemefiairenmgrerirsevlrhqhpgmsfgahlpenitaefvrdevaagraiipaninhpesepmiigrnflvkvnanignsavtssieeeveklvwstrwgadtvmdlstgryihetrewilrnspvpigtvpiyqalekvngiaedltweafrdtlleqaeqgvdyftihagvllryvpmtakrltgivsrggsimakwclshhqenflyqhfreiceicaaydvslslgdglrpgsiqdandeaqfaelhtlgeltkiaweydvqvmiegpghvpmqmirrnmteelehcheapfytlgplttdiapgydhftsgigaamigwfgcamlcyvtpkehlglpnkedvkqglitykiaahaadlakghpgaqirdnamskarfefrwedqfnlaldpftarayhdetlpqesgkvahfcsmcgpkfcsmkisqevrdyaatqtiemgmadmsenfrarggeiylrkeea]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=thiC+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=thiC]]&nbsp;&nbsp;


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<protect><!--Quickview_notes--></protect>
<protect><!--Quickview_notes--></protect>
===Notes===
===Notes===
{{BacktoTop}}
{{BacktoTop}}
thiCEFSGH operon expression is controlled by a thiamine pyrophosphate (TPP) responsive riboswitch in the 5' UTR. The thiC riboswitch is the target for the antibiotic pyrithiamine.<ref name='LIB:EcoGene'/>




Latest revision as of 21:45, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

thiC

Gene Synonym(s)

ECK3986, b3994, JW3958[1], JW3958

Product Desc.

thiamin biosynthesis protein ThiC[2][3]

Hydroxymethylpyrimidine synthesis, for thiamine biosynthesis[4]

Product Synonyms(s)

thiamin (pyrimidine moiety) biosynthesis protein[1], B3994[2][1], ThiC[2][1] , ECK3986, JW3958, b3994

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): thiCEFSGH[2]

Regulation/Activity
Quick Links



        

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


thiCEFSGH operon expression is controlled by a thiamine pyrophosphate (TPP) responsive riboswitch in the 5' UTR. The thiC riboswitch is the target for the antibiotic pyrithiamine.[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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