yefM:Quickview: Difference between revisions

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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[yefM:Gene|''yefM]]'' (synonyms: ''ECK2012, b2017, JW5835'')<ref name='LIB:Riley_2006'/>
''yefM''
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[yefM:Gene_Product(s)|YefM product]]<ref name='LIB:Riley_2006'/>: antitoxin of the YoeB-YefM toxin-antitoxin system product, B2017 product
''ECK2012, b2017, JW5835''<ref name='LIB:Riley_2006'/>, JW5835''
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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antitoxin of the YoeB-YefM toxin-antitoxin pair<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>  
antitoxin of the YoeB-YefM toxin-antitoxin pair<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;


Component of [[:Category:Complex:YoeB-YefM toxin-antitoxin complex|YoeB-YefM toxin-antitoxin complex]]<ref name='LIB:EcoCyc11.1'/>
Component of [[:Category:Complex:YoeB-YefM toxin-antitoxin complex|YoeB-YefM toxin-antitoxin complex]]<ref name='LIB:EcoCyc11.1'/>


Antitoxin for YoeB toxin; binds YoeB RNase-like domain<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
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''antitoxin of the YoeB-YefM toxin-antitoxin system<ref name='LIB:Riley_2006'/>, B2017<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YefM<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK2012, JW5835, b2017''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:yoeB|yoeB]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:yoeB|yoeB]]<ref name='LIB:EcoCyc10.6'/>  
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!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=yefM&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG12844]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120002397&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=yefM&loc=MG1655%3A2087737..2087486,W3110%3A2091850..2091599,DH10B%3A2178745..2178494,BW2952%3A1979969..1980220]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1979969&end=1980220&gene=yefM&aa=mnctkeeidmrtisysearqnlsatmmkavedhapilitrqngeacvlmsleeynsleetayllrspanarrlmdsidslksgkgtekdiie]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=yefM+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=yefM]]&nbsp;&nbsp;
 
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===Notes===
===Notes===
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Homologous to phage P1 Phd antitoxin and Enterococcus faecium antitoxin, Axe. Induced during biofilm formation.  yefM-yoeB is the only toxin-antitoxin pair involved in Lon dependent lethality.<ref name='LIB:EcoGene'/>




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==References==
==References==
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Latest revision as of 21:42, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

yefM

Gene Synonym(s)

ECK2012, b2017, JW5835[1], JW5835

Product Desc.

antitoxin of the YoeB-YefM toxin-antitoxin pair[2][3];

Component of YoeB-YefM toxin-antitoxin complex[3]

Antitoxin for YoeB toxin; binds YoeB RNase-like domain[4]

Product Synonyms(s)

antitoxin of the YoeB-YefM toxin-antitoxin system[1], B2017[2][1], YefM[2][1] , ECK2012, JW5835, b2017

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): yoeB[2]

Regulation/Activity
Quick Links



        

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Notes

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Homologous to phage P1 Phd antitoxin and Enterococcus faecium antitoxin, Axe. Induced during biofilm formation. yefM-yoeB is the only toxin-antitoxin pair involved in Lon dependent lethality.[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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