Cis Element:Phage lambda attR: Difference between revisions
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!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links | !|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links | ||
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{{GBrowseFastaLink|bacteriophage_lambda|NC_001416|27571|27742|FASTA Dump}} | {{GBrowseFastaLink|bacteriophage_lambda|NC_001416|27571|27742|FASTA Dump}} | ||
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!|Database!!Accession!!Notes | !|Database!!Accession!!Notes | ||
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[[EcoCyc]] | |||
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EcoCyc: | |||
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]] | |||
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[[EcoGene]] | |||
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EcoGene: | |||
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]] | |||
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[[RegulonDB]] | |||
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RegulonDB: | |||
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]] | |||
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[[EchoBASE]] | |||
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EchoBASE: | |||
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]] | |||
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[[ASAP]] | |||
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ASAP: | |||
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]] | |||
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===Categories===[[Category:Phage lambda:Cis_Element]] | ===Categories===[[Category:Phage lambda:Cis_Element]] | ||
Latest revision as of 08:40, 27 May 2013
Cis element summary table
| Standard Name |
lambda attR |
|---|---|
| Synonyms | |
| Function |
Right prophage att site; DNA sequence at right end of integrated prophage lambda genome that mediate synapsis and strand exchange along with attL site (left end of lambda genome). |
| Location |
In the linear sequence of the lambda genome (NC_001416), the sequence position is: nt 27,571 - 27,742 The position in the E. coli genome: |
| SO terms |
|
| edit table |
Notes
In the free phage, the att site is referred to as attP (phage attachment site) while the corresponding site in a host genome is called attB (bacterial attachment site). After integration occurs to create a prophage, these sites are then known as attL (left end of prophage) and attR (right end of prophage). Reviewed in Lambda II.[1]
Location and Sequence
See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.
| Strain | Map location | Genome coordinates | Genome browsers | Sequence links |
|---|---|---|---|---|
|
Phage lambda (NC_001416) |
NC_001416: 27571..27742 |
|||
| edit table |
Notes
The sequence of attR is:
1 GCGCTAATGC TCTGTTACAG GTCACTAATA CCATCTAAGT AGTTGATTCA TAGTGACTGC ATATGTTGTG <br\> TTTTACAGTA TTATGTAGTC TGTTTTTTAT GCAAAATCTA ATTTAATATA TTGATATTTA TATCATTTTA <br\> CGTTTCTCGT TCAGCTTTTT TATACTAACT TG 172
Interactions
See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.
| Partner Type | Partner | Notes | References | Evidence |
|---|---|---|---|---|
| edit table |
Notes
Mutant alleles and phenotypes
| Allele | Nt change(s) | Phenotype: Type | Phenotype: Description | Reference | Availability | Comments |
|---|---|---|---|---|---|---|
| edit table |
Notes
Genetic Resources
See Help:Gene_resources for help entering information into the Genetic Resources table.
| Resource | Resource Type | Source | Notes/Reference |
|---|---|---|---|
| edit table |
Notes
Accessions
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
EcoCyc: |
Escherichia coli str. K-12 substr. MG1655 | |
|
EcoGene: |
Escherichia coli str. K-12 substr. MG1655 | |
|
RegulonDB: |
Escherichia coli str. K-12 substr. MG1655 | |
|
EchoBASE: |
Escherichia coli str. K-12 substr. MG1655 | |
|
ASAP: |
Escherichia coli str. K-12 substr. MG1655 | |
| edit table |
Notes
References
See Help:References for how to manage references in EcoliWiki.
- ↑ Edited by Roger W. Hendrix, Jeffrey W. Roberts, Franklin W. Stahl and Robert A. Weisberg (1983) Lambda II (Cold Spring Harbor Laboratory, Cold Spring Harbor, NY)
===Categories===