rplL:Evolution: Difference between revisions

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!Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
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''Anopheles gambiae''   
''Anopheles gambiae''   
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''Arabidopsis thaliana''   
''Arabidopsis thaliana''   
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''Bos taurus''   
''Bos taurus''   
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''Caenorhabditis briggsae''   
''Caenorhabditis briggsae''   
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''Caenorhabditis elegans''   
''Caenorhabditis elegans''   
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''Canis familiaris''   
''Canis familiaris''   
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''Danio rerio''   
''Danio rerio''   
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''Drosophila melanogaster''   
''Drosophila melanogaster''   
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''Drosophila pseudoobscura''   
''Drosophila pseudoobscura''   
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''Homo sapiens''   
''Homo sapiens''   
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''Monodelphis domestica''   
''Monodelphis domestica''   
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From Inparanoid:20070104  
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''Mus musculus''   
''Mus musculus''   
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''Oryza gramene''   
''Oryza gramene''   
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''Pan troglodytes''   
''Pan troglodytes''   
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''Saccharomyces cerevisiae''   
''Saccharomyces cerevisiae''   
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''Schizosaccharomyces pombe''   
''Schizosaccharomyces pombe''   
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''Takifugu rubripes''   
''Takifugu rubripes''   
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''Tetraodon nigroviridis''   
''Tetraodon nigroviridis''   
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''Shigella flexneri''   
''Shigella flexneri''   
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From SHIGELLACYC  
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''E. coli'' O157  
''E. coli'' O157  
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===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=48300 SUPERFAMILY:48300]
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[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
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[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11809:SF15 PTHR11809:SF15]
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00542 PFAM:PF00542]
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=54736 SUPERFAMILY:54736]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00542 PF00542  Ribosomal protein L7/L12 C-terminal domain]
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[[EcoCyc]]
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EcoCyc:EG10873
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG10873
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120000864
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB0866
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0013038
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
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<protect><!--Families_notes--></protect>
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===Notes===
===Notes===
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==References==
==References==
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{{RefHelp}}
<references/>
<references />
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__NOTOC__
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===Categories===
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Latest revision as of 08:37, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000015113 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT3G27830 (score: 1.000; bootstrap: 81%)
  • AT3G27850 (score: 1.000; bootstrap: 80%)
  • AT3G27840 (score: 0.606)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000000534 (score: 1.000; bootstrap: 60%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00037769 (score: 1.000; bootstrap: 100%)
  • WBGene00037816 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00012361 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000008691 (score: 1.000; bootstrap: 61%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-050417-187 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-050417-188 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0011787 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA18594-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000333837 (score: 1.000; bootstrap: 63%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000003533 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Mus musculus

  • MGI:1926273 (score: 1.000; bootstrap: 63%)

From Inparanoid:20070104

Oryza gramene

  • Q06030 (score: 1.000; bootstrap: 83%)
  • Q06036 (score: 1.000; bootstrap: 82%)
  • Q9ZWF4 (score: 0.629)
  • O22386 (score: 0.515)
  • Q9ZWF5 (score: 0.489)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000016631 (score: 1.000; bootstrap: 62%)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YGL068W (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPCC4B39c (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000135573 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00019749001 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

RPLL

From SHIGELLACYC

E. coli O157

RPLL

From ECOO157CYC

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Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Superfamily (EcoliWiki Page)

SUPERFAMILY:48300

Panther (EcoliWiki Page)

PTHR11809:SF15

Superfamily (EcoliWiki Page)

SUPERFAMILY:54736

Pfam (EcoliWiki Page)

PF00542 Ribosomal protein L7/L12 C-terminal domain

EcoCyc

EcoCyc:EG10873

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10873

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000864

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0866

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0013038

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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