typA:Evolution: Difference between revisions

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!Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
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''Shigella flexneri''   
''Shigella flexneri''   
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''E. coli'' O157
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YIHK
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From ECOO157CYC
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''Sinorhizobium melilotii''
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Required for symbiosis with ''Medicago truncatula'' and survival of certain stresses <ref name='PMID:15000390'/>
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''Salmonella enterica'' serovar Typhimurium
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<ref name='PMID:18621905'/>
 
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===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF03144 PF03144  Elongation factor Tu domain 2]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00009 PF00009  Elongation factor Tu GTP binding domain]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00679 PF00679  Elongation factor G C-terminus]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=50447 SUPERFAMILY:50447]
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[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
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[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23115:SF14 PTHR23115:SF14]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=52540 SUPERFAMILY:52540]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=54980 SUPERFAMILY:54980]
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00009 PFAM:PF00009]
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=54980 SUPERFAMILY:54980]
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[[EcoCyc]]
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EcoCyc:EG11837
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG11837
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120001768
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB1783
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0012648
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
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===Notes===
===Notes===
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==References==
==References==
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<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
[[Category:Genes with homologs in Shigella flexneri ]][[Category:Genes with homologs in E. coli O157]]</noinclude>
===Categories===
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[[Category:Genes with homologs in Shigella flexneri ]]
[[Category:Genes with homologs in E. coli O157]]

Latest revision as of 08:37, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Shigella flexneri

YIHK

From SHIGELLACYC

E. coli O157

YIHK

From ECOO157CYC

Sinorhizobium melilotii

Required for symbiosis with Medicago truncatula and survival of certain stresses [1]

Salmonella enterica serovar Typhimurium

[2]

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF03144 Elongation factor Tu domain 2

Pfam (EcoliWiki Page)

PF00009 Elongation factor Tu GTP binding domain

Pfam (EcoliWiki Page)

PF00679 Elongation factor G C-terminus

Superfamily (EcoliWiki Page)

SUPERFAMILY:50447

Panther (EcoliWiki Page)

PTHR23115:SF14

Superfamily (EcoliWiki Page)

SUPERFAMILY:52540

Superfamily (EcoliWiki Page)

SUPERFAMILY:54980

Superfamily (EcoliWiki Page)

SUPERFAMILY:54980

EcoCyc

EcoCyc:EG11837

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11837

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001768

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1783

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0012648

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ Kiss, E et al. (2004) The typA gene is required for stress adaptation as well as for symbiosis of Sinorhizobium meliloti 1021 with certain Medicago truncatula lines. Mol. Plant Microbe Interact. 17 235-44 PubMed
  2. ↑ deLivron, MA & Robinson, VL (2008) Salmonella enterica serovar Typhimurium BipA exhibits two distinct ribosome binding modes. J. Bacteriol. 190 5944-52 PubMed

Categories

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