glnA:Evolution: Difference between revisions

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!Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
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''Anopheles gambiae''   
''Anopheles gambiae''   
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''Apis mellifera''   
''Apis mellifera''   
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''Arabidopsis thaliana''   
''Arabidopsis thaliana''   
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''Caenorhabditis briggsae''   
''Caenorhabditis briggsae''   
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From Inparanoid:20070104  
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''Caenorhabditis elegans''   
''Caenorhabditis elegans''   
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From Inparanoid:20070104  
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''Ciona intestinalis''   
''Ciona intestinalis''   
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From Inparanoid:20070104  
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''Danio rerio''   
''Danio rerio''   
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From Inparanoid:20070104  
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''Gallus gallus''   
''Gallus gallus''   
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''Oryza gramene''   
''Oryza gramene''   
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''Saccharomyces cerevisiae''   
''Saccharomyces cerevisiae''   
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''Takifugu rubripes''   
''Takifugu rubripes''   
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From Inparanoid:20070104  
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''Shigella flexneri''   
''Shigella flexneri''   
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From SHIGELLACYC  
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''E. coli'' O157  
''E. coli'' O157  
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From ECOO157CYC  
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===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00120 PF00120  Glutamine synthetase, catalytic domain]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF03951 PF03951  Glutamine synthetase, beta-Grasp domain]
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[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
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[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR20852:SF7 PTHR20852:SF7]
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF03951 PFAM:PF03951]
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=54368 SUPERFAMILY:54368]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=55931 SUPERFAMILY:55931]
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[[EcoCyc]]
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EcoCyc:EG10383
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG10383
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120000376
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB0378
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0012640
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
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===Notes===
===Notes===
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==References==
==References==
{{BacktoTop}}
{{BacktoTop}}
{{RefHelp}}
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
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===Categories===
===Categories===
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Latest revision as of 08:37, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000019490 (score: 1.000; bootstrap: 100%)
  • ENSANGP00000014914 (score: 0.575)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000015737 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT3G53180 (score: 1.000; bootstrap: 96%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00039586 (score: 1.000; bootstrap: 100%)
  • WBGene00039664 (score: 1.000; bootstrap: 100%)
  • WBGene00039019 (score: 0.806)
  • WBGene00034517 (score: 0.579)
  • WBGene00035212 (score: 0.463)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00001607 (score: 1.000; bootstrap: 100%)
  • WBGene00001606 (score: 1.000; bootstrap: 100%)
  • WBGene00001603 (score: 0.806)
  • WBGene00001604 (score: 0.582)
  • WBGene00001602 (score: 0.426)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000011993 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Danio rerio

  • ZDB-CDNA-040425-339 (score: 1.000; bootstrap: 100%)
  • ZDB-GENE-030131-8417 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040425-340 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040425-338 (score: 0.897)
  • ZDB-GENE-030131-688 (score: 0.893)
  • ZDB-CDNA-041212-74 (score: 0.632)
  • ZDB-GENE-041212-65 (score: 0.632)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000013857 (score: 1.000; bootstrap: 100%)
  • ENSGALP00000005819 (score: 0.577)

From Inparanoid:20070104

Oryza gramene

  • Q5MD07 (score: 1.000; bootstrap: 97%)
  • Q7XDQ4 (score: 0.808)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YPR035W (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000137325 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000151139 (score: 0.727)

From Inparanoid:20070104

Shigella flexneri

GLNA

From SHIGELLACYC

E. coli O157

GLNA

From ECOO157CYC

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Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00120 Glutamine synthetase, catalytic domain

Pfam (EcoliWiki Page)

PF03951 Glutamine synthetase, beta-Grasp domain

Panther (EcoliWiki Page)

PTHR20852:SF7

Superfamily (EcoliWiki Page)

SUPERFAMILY:54368

Superfamily (EcoliWiki Page)

SUPERFAMILY:55931

EcoCyc

EcoCyc:EG10383

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10383

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000376

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0378

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0012640

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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