trxA:Evolution: Difference between revisions

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!|Database!!Accession!!Notes
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00085 PFAM:PF00085]
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=52833 SUPERFAMILY:52833]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00085 PF00085  Thioredoxin]
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[[EcoCyc]]
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EcoCyc:EG11031
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG11031
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120001020
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB1024
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0012357
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


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Latest revision as of 08:37, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000027639 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000012348 (score: 1.000; bootstrap: 60%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT1G03680 (score: 1.000; bootstrap: 90%)
  • AT4G03520 (score: 0.649)
  • AT3G15360 (score: 0.219)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000000014 (score: 1.000; bootstrap: 63%)
  • ENSBTAP00000033144 (score: 0.494)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00031142 (score: 1.000; bootstrap: 55%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00007099 (score: 1.000; bootstrap: 56%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000002247 (score: 1.000; bootstrap: 59%)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000013356 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-040426-1795 (score: 1.000; bootstrap: 62%)
  • ZDB-CDNA-040425-2735 (score: 1.000; bootstrap: 62%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0185040 (score: 1.000; bootstrap: 49%)
  • DDB0186269 (score: 1.000; bootstrap: 50%)
  • DDB0191909 (score: 1.000; bootstrap: 51%)
  • DDB0217531 (score: 0.064)
  • DDB0231409 (score: 0.051)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0029752 (score: 1.000; bootstrap: 73%)
  • FBgn0040070 (score: 0.198)
  • FBgn0036442 (score: 0.084)
  • FBgn0011761 (score: 0.080)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA17324-PA (score: 1.000; bootstrap: 65%)
  • GA16546-PA (score: 0.174)
  • GA12311-PA (score: 0.140)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000020444 (score: 1.000; bootstrap: 56%)
  • ENSGALP00000020443 (score: 0.118)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000216185 (score: 1.000; bootstrap: 57%)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000016897 (score: 1.000; bootstrap: 81%)
  • ENSMMUP00000028455 (score: 0.069)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000000995 (score: 1.000; bootstrap: 64%)

From Inparanoid:20070104

Mus musculus

  • MGI:1929468 (score: 1.000; bootstrap: 65%)

From Inparanoid:20070104

Oryza gramene

  • Q9ZP20 (score: 1.000; bootstrap: 81%)
  • Q5NDA6 (score: 0.575)
  • Q9ZP21 (score: 0.575)
  • Q41864 (score: 0.517)
  • Q6H7E4 (score: 0.146)
  • Q7X8R5 (score: 0.129)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000020036 (score: 1.000; bootstrap: 56%)
  • ENSPTRP00000039310 (score: 0.068)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000007537 (score: 1.000; bootstrap: 64%)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YLR043C (score: 1.000; bootstrap: 80%)
  • YGR209C (score: 0.674)
  • YCR083W (score: 0.217)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPAC7D47c (score: 1.000; bootstrap: 68%)
  • SPBC12D127c (score: 0.116)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000134638 (score: 1.000; bootstrap: 70%)
  • NEWSINFRUP00000132572 (score: 0.083)
  • NEWSINFRUP00000171508 (score: 0.070)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00023150001 (score: 1.000; bootstrap: 73%)
  • GSTENP00029198001 (score: 0.056)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000000504 (score: 1.000; bootstrap: 70%)

From Inparanoid:20070104

Shigella flexneri

TRXA

From SHIGELLACYC

E. coli O157

TRXA

From ECOO157CYC

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Superfamily (EcoliWiki Page)

SUPERFAMILY:52833

Pfam (EcoliWiki Page)

PF00085 Thioredoxin

EcoCyc

EcoCyc:EG11031

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11031

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001020

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1024

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0012357

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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