rpsE:Evolution: Difference between revisions

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!Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
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''Apis mellifera''   
''Apis mellifera''   
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''Arabidopsis thaliana''   
''Arabidopsis thaliana''   
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''Bos taurus''   
''Bos taurus''   
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''Caenorhabditis briggsae''   
''Caenorhabditis briggsae''   
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From Inparanoid:20070104  
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''Caenorhabditis elegans''   
''Caenorhabditis elegans''   
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''Canis familiaris''   
''Canis familiaris''   
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''Danio rerio''   
''Danio rerio''   
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''Dictyostelium discoideum''   
''Dictyostelium discoideum''   
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From Inparanoid:20070104  
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''Drosophila melanogaster''   
''Drosophila melanogaster''   
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''Drosophila pseudoobscura''   
''Drosophila pseudoobscura''   
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''Homo sapiens''   
''Homo sapiens''   
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''Macaca mulatta''   
''Macaca mulatta''   
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From Inparanoid:20070104  
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''Mus musculus''   
''Mus musculus''   
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''Pan troglodytes''   
''Pan troglodytes''   
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''Saccharomyces cerevisiae''   
''Saccharomyces cerevisiae''   
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''Schizosaccharomyces pombe''   
''Schizosaccharomyces pombe''   
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''Takifugu rubripes''   
''Takifugu rubripes''   
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''Tetraodon nigroviridis''   
''Tetraodon nigroviridis''   
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''Shigella flexneri''   
''Shigella flexneri''   
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From SHIGELLACYC  
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''E. coli'' O157  
''E. coli'' O157  
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===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
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[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13718:SF60 PTHR13718:SF60]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=54211 SUPERFAMILY:54211]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=54768 SUPERFAMILY:54768]
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00333 PFAM:PF00333]
[http://pfam.janelia.org/family/PF00333 PF00333 Ribosomal protein S5, N-terminal domain]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF03719 PF03719  Ribosomal protein S5, C-terminal domain]
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[[EcoCyc]]
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EcoCyc:EG10904
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG10904
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120000895
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB0897
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0010823
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
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===Notes===
===Notes===
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==References==
==References==
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Latest revision as of 08:36, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Apis mellifera

  • ENSAPMP00000009664 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT2G33800 (score: 1.000; bootstrap: 98%)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000010843 (score: 1.000; bootstrap: 51%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00037267 (score: 1.000; bootstrap: 100%)
  • WBGene00041867 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00008452 (score: 1.000; bootstrap: 56%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000010468 (score: 1.000; bootstrap: 55%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-040426-2454 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040425-3401 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0215391 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0044510 (score: 1.000; bootstrap: 78%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA19229-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000272418 (score: 1.000; bootstrap: 57%)
  • ENSP00000332440 (score: 0.803)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000021341 (score: 1.000; bootstrap: 63%)

From Inparanoid:20070104

Mus musculus

  • MGI:3643279 (score: 1.000; bootstrap: 57%)
  • MGI:3647575 (score: 1.000; bootstrap: 56%)
  • MGI:3645604 (score: 0.983)
  • MGI:105110 (score: 0.983)
  • MGI:3645003 (score: 0.963)
  • MGI:3648968 (score: 0.955)
  • MGI:3647574 (score: 0.946)
  • MGI:3644876 (score: 0.933)
  • MGI:3647516 (score: 0.885)
  • MGI:3643826 (score: 0.838)
  • MGI:3645904 (score: 0.831)
  • MGI:3646785 (score: 0.551)
  • MGI:3648610 (score: 0.270)
  • MGI:3647821 (score: 0.231)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000020929 (score: 1.000; bootstrap: 54%)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YBR251W (score: 1.000; bootstrap: 66%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPAC4G97c (score: 1.000; bootstrap: 72%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000129380 (score: 1.000; bootstrap: 78%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00033426001 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

RPSE

From SHIGELLACYC

E. coli O157

RPSE

From ECOO157CYC

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Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Panther (EcoliWiki Page)

PTHR13718:SF60

Superfamily (EcoliWiki Page)

SUPERFAMILY:54211

Superfamily (EcoliWiki Page)

SUPERFAMILY:54768

Pfam (EcoliWiki Page)

PF00333 Ribosomal protein S5, N-terminal domain

Pfam (EcoliWiki Page)

PF03719 Ribosomal protein S5, C-terminal domain

EcoCyc

EcoCyc:EG10904

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10904

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000895

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0897

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0010823

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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