rlmE:Evolution: Difference between revisions

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From ECOO157CYC  
From ECOO157CYC  


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!|Database!!Accession!!Notes
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF01728 PFAM:PF01728]
[http://pfam.janelia.org/family/PF01728 PF01728 FtsJ-like methyltransferase]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=53335 SUPERFAMILY:53335]
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[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
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[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10920:SF11 PTHR10920:SF11]
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[[EcoCyc]]
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EcoCyc:
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


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Latest revision as of 08:35, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000014205 (score: 1.000; bootstrap: 53%)
  • ENSANGP00000026202 (score: 0.067)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000017171 (score: 1.000; bootstrap: 98%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT4G25730 (score: 1.000; bootstrap: 76%)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000003214 (score: 1.000; bootstrap: 65%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00040049 (score: 1.000; bootstrap: 55%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00009735 (score: 1.000; bootstrap: 64%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000024186 (score: 1.000; bootstrap: 68%)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000009727 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-041114-83 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-041114-83 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0168604 (score: 1.000; bootstrap: 56%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0038737 (score: 1.000; bootstrap: 60%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA11008-PA (score: 1.000; bootstrap: 61%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000006732 (score: 1.000; bootstrap: 64%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000327660 (score: 1.000; bootstrap: 69%)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000022396 (score: 1.000; bootstrap: 69%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000012180 (score: 1.000; bootstrap: 54%)

From Inparanoid:20070104

Mus musculus

  • MGI:1915267 (score: 1.000; bootstrap: 66%)

From Inparanoid:20070104

Oryza gramene

  • Q688W3 (score: 1.000; bootstrap: 85%)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000032192 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000001702 (score: 1.000; bootstrap: 67%)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YGL136C (score: 1.000; bootstrap: 66%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPAC4F103c (score: 1.000; bootstrap: 66%)
  • SPAC16871 (score: 0.104)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000138138 (score: 1.000; bootstrap: 57%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00010080001 (score: 1.000; bootstrap: 65%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000012452 (score: 1.000; bootstrap: 89%)

From Inparanoid:20070104

Shigella flexneri

FTSJ

From SHIGELLACYC

E. coli O157

FTSJ

From ECOO157CYC

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Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF01728 FtsJ-like methyltransferase

Superfamily (EcoliWiki Page)

SUPERFAMILY:53335

Panther (EcoliWiki Page)

PTHR10920:SF11

EcoCyc

EcoCyc:

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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