rpoD:Evolution: Difference between revisions

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!|Organism!!Homologs (Statistics)!!Comments
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!|Database!!Accession!!Notes
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF04546 PF04546  Sigma-70, non-essential region]
[http://pfam.janelia.org/family/PF04546 PF04546  Sigma-70, non-essential region]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF03979 PF03979  Sigma-70 factor, region 1.1]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00140 PF00140  Sigma-70 factor, region 1.2]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF04539 PF04539  Sigma-70 region 3]
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[[EcoCyc]]
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EcoCyc:EG10896
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG10896
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120000887
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB0889
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0010070
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


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Latest revision as of 08:35, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Arabidopsis thaliana

  • AT5G13730 (score: 1.000; bootstrap: 69%)

From Inparanoid:20070104

Oryza gramene

  • Q7EY07 (score: 1.000; bootstrap: 53%)
  • O48655 (score: 1.000; bootstrap: 52%)
  • Q7EY08 (score: 1.000; bootstrap: 53%)
  • Q9ZP70 (score: 0.867)
  • O24348 (score: 0.861)
  • Q9ZTI2 (score: 0.845)
  • Q9ZTI3 (score: 0.839)

From Inparanoid:20070104

Shigella flexneri

RPOD

From SHIGELLACYC

E. coli O157

RPOD

From ECOO157CYC

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Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF04542 Sigma-70 region 2

Pfam (EcoliWiki Page)

PF04545 Sigma-70, region 4

Superfamily (EcoliWiki Page)

SUPERFAMILY:88659

Superfamily (EcoliWiki Page)

SUPERFAMILY:88659

Superfamily (EcoliWiki Page)

SUPERFAMILY:88946

Pfam (EcoliWiki Page)

PF04546 Sigma-70, non-essential region

Pfam (EcoliWiki Page)

PF03979 Sigma-70 factor, region 1.1

Pfam (EcoliWiki Page)

PF00140 Sigma-70 factor, region 1.2

Pfam (EcoliWiki Page)

PF04539 Sigma-70 region 3

EcoCyc

EcoCyc:EG10896

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10896

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000887

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0889

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0010070

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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