nuoC:Evolution: Difference between revisions

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!Organism!!Homologs (Statistics)!!Comments
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''Anopheles gambiae''   
''Anopheles gambiae''   
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''Apis mellifera''   
''Apis mellifera''   
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''Bos taurus''   
''Bos taurus''   
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''Caenorhabditis briggsae''   
''Caenorhabditis briggsae''   
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From Inparanoid:20070104  
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''Caenorhabditis elegans''   
''Caenorhabditis elegans''   
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''Canis familiaris''   
''Canis familiaris''   
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''Ciona intestinalis''   
''Ciona intestinalis''   
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''Danio rerio''   
''Danio rerio''   
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''Dictyostelium discoideum''   
''Dictyostelium discoideum''   
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''Drosophila melanogaster''   
''Drosophila melanogaster''   
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''Drosophila pseudoobscura''   
''Drosophila pseudoobscura''   
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''Gallus gallus''   
''Gallus gallus''   
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''Homo sapiens''   
''Homo sapiens''   
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''Macaca mulatta''   
''Macaca mulatta''   
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''Monodelphis domestica''   
''Monodelphis domestica''   
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''Mus musculus''   
''Mus musculus''   
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''Oryza gramene''   
''Oryza gramene''   
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''Pan troglodytes''   
''Pan troglodytes''   
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''Takifugu rubripes''   
''Takifugu rubripes''   
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''Tetraodon nigroviridis''   
''Tetraodon nigroviridis''   
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''Xenopus tropicalis''   
''Xenopus tropicalis''   
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''Shigella flexneri''   
''Shigella flexneri''   
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From SHIGELLACYC  
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''E. coli'' O157  
''E. coli'' O157  
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===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00346 PF00346  Respiratory-chain NADH dehydrogenase, 49 Kd subunit]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00329 PF00329  Respiratory-chain NADH dehydrogenase, 30 Kd subunit]
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[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
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[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11993:SF10 PTHR11993:SF10]
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00329 PFAM:PF00329]
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=56762 SUPERFAMILY:56762]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=143243 SUPERFAMILY:143243]
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[[EcoCyc]]
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EcoCyc:EG12084
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG12084
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120001990
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB2009
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0007549
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
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===Notes===
===Notes===
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==References==
==References==
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{{RefHelp}}
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
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===Categories===
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Latest revision as of 08:34, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000021821 (score: 1.000; bootstrap: 100%)
  • ENSANGP00000021345 (score: 0.888)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000002923 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000002852 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00029684 (score: 1.000; bootstrap: 100%)
  • WBGene00038858 (score: 0.871)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00006463 (score: 1.000; bootstrap: 100%)
  • WBGene00001520 (score: 0.905)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000018953 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000012166 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-051120-30 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-051120-18 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-050522-273 (score: 0.438)
  • ZDB-GENE-050522-273 (score: 0.438)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0201599 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0039331 (score: 1.000; bootstrap: 100%)
  • FBgn0039909 (score: 0.394)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA11278-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000001067 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000289897 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000006020 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000006337 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Mus musculus

  • MGI:2385112 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Oryza gramene

  • P25709 (score: 1.000; bootstrap: 69%)
  • Q6L3D4 (score: 0.992)
  • Q6ENP1 (score: 0.992)
  • Q95H42 (score: 0.955)
  • P12132 (score: 0.953)
  • Q6ENA1 (score: 0.953)
  • O98691 (score: 0.952)
  • Q6QY32 (score: 0.767)
  • Q6QXW9 (score: 0.767)
  • Q8SAU0 (score: 0.205)
  • Q7G6A6 (score: 0.205)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000002642 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000143516 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00006157001 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000043132 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

NUOC

From SHIGELLACYC

E. coli O157

NUOC

From ECOO157CYC

edit table


Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit

Pfam (EcoliWiki Page)

PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit

Panther (EcoliWiki Page)

PTHR11993:SF10

Superfamily (EcoliWiki Page)

SUPERFAMILY:56762

Superfamily (EcoliWiki Page)

SUPERFAMILY:143243

EcoCyc

EcoCyc:EG12084

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12084

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001990

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2009

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0007549

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

[back to top]


See Help:References for how to manage references in EcoliWiki.


Categories

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