pykF:Evolution: Difference between revisions

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!|Organism!!Homologs (Statistics)!!Comments
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!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00224 PFAM:PF00224]
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=50800 SUPERFAMILY:50800]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=50800 SUPERFAMILY:50800]
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=51621 SUPERFAMILY:51621]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=51621 SUPERFAMILY:51621]
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=52935 SUPERFAMILY:52935]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00224 PF00224  Pyruvate kinase, barrel domain]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=52935 SUPERFAMILY:52935]
[http://pfam.janelia.org/family/PF02887 PF02887  Pyruvate kinase, alpha/beta domain]
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[[EcoCyc]]
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EcoCyc:EG10804
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG10804
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120000795
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB0797
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0005600
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


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Latest revision as of 08:32, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000021580 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000018774 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT5G63680 (score: 1.000; bootstrap: 97%)
  • AT5G08570 (score: 0.901)
  • AT5G56350 (score: 0.643)
  • AT4G26390 (score: 0.612)
  • AT3G04050 (score: 0.493)
  • AT3G25960 (score: 0.464)
  • AT3G55650 (score: 0.463)
  • AT3G55810 (score: 0.379)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000002099 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000022683 (score: 0.502)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00036739 (score: 1.000; bootstrap: 100%)
  • WBGene00028310 (score: 0.453)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00009126 (score: 1.000; bootstrap: 100%)
  • WBGene00014001 (score: 0.382)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000026035 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000024956 (score: 0.488)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000008557 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-031201-4 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040425-663 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040425-662 (score: 0.942)
  • ZDB-CDNA-040801-244 (score: 0.713)
  • ZDB-GENE-040801-230 (score: 0.713)
  • ZDB-CDNA-040425-661 (score: 0.483)
  • ZDB-GENE-010907-1 (score: 0.483)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0231421 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0003178 (score: 1.000; bootstrap: 99%)
  • FBgn0031462 (score: 0.143)
  • FBgn0038952 (score: 0.135)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA20296-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000034108 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000320171 (score: 1.000; bootstrap: 100%)
  • ENSP00000335066 (score: 0.556)
  • ENSP00000271946 (score: 0.532)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000030465 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000030876 (score: 0.169)
  • ENSMMUP00000013347 (score: 0.164)
  • ENSMMUP00000019192 (score: 0.118)
  • ENSMMUP00000005543 (score: 0.097)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000021280 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000002312 (score: 0.427)

From Inparanoid:20070104

Mus musculus

  • MGI:97591 (score: 1.000; bootstrap: 100%)
  • MGI:97604 (score: 0.533)

From Inparanoid:20070104

Oryza gramene

  • Q7XKB5 (score: 1.000; bootstrap: 99%)
  • Q5NBQ0 (score: 0.626)
  • Q6IUP7 (score: 0.616)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000012388 (score: 1.000; bootstrap: 100%)
  • ENSPTRP00000001950 (score: 0.553)
  • ENSPTRP00000002406 (score: 0.346)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000015398 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000027700 (score: 0.508)
  • ENSRNOP00000044170 (score: 0.505)
  • ENSRNOP00000040032 (score: 0.491)
  • ENSRNOP00000015275 (score: 0.076)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YAL038W (score: 1.000; bootstrap: 100%)
  • YOR347C (score: 0.597)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPAC4H30c (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000141035 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000128238 (score: 0.778)
  • NEWSINFRUP00000129186 (score: 0.299)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00025632001 (score: 1.000; bootstrap: 100%)
  • GSTENP00012066001 (score: 0.726)
  • GSTENP00015375001 (score: 0.449)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000028820 (score: 1.000; bootstrap: 100%)
  • ENSXETP00000011366 (score: 0.656)

From Inparanoid:20070104

Shigella flexneri

PYKF

From SHIGELLACYC

E. coli O157

PYKF

From ECOO157CYC

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Superfamily (EcoliWiki Page)

SUPERFAMILY:50800

Superfamily (EcoliWiki Page)

SUPERFAMILY:51621

Superfamily (EcoliWiki Page)

SUPERFAMILY:52935

Pfam (EcoliWiki Page)

PF00224 Pyruvate kinase, barrel domain

Pfam (EcoliWiki Page)

PF02887 Pyruvate kinase, alpha/beta domain

EcoCyc

EcoCyc:EG10804

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10804

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000795

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0797

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0005600

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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