tonB:Evolution: Difference between revisions

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==Homologs in Other Organisms==
==Homologs in Other Organisms==
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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="L46abbb54a3127"  class=" tableEdit Evolution_homologs_table" 
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!Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
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''Oryza gramene''   
''Oryza gramene''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Rattus norvegicus''   
''Rattus norvegicus''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Xenopus tropicalis''   
''Xenopus tropicalis''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Shigella flexneri''   
''Shigella flexneri''   
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From SHIGELLACYC  
From SHIGELLACYC  
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''E. coli'' O157
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TONB
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From ECOO157CYC
 
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{{Evolution_homologs_table_help}}
 


===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_415768&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_415768&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


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==Families==
==Families==
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=74653 SUPERFAMILY:74653]
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF03544 PFAM:PF03544]
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF03544 PF03544 Gram-negative bacterial tonB protein]
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[[EcoCyc]]
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EcoCyc:EG11012
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG11012
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120001001
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB1005
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0004196
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
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<protect><!--Families_notes--></protect>
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===Notes===
===Notes===
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==Links==
==Links==
{{Evolution_links_default}}
{{BacktoTop}}
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==References==
==References==
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{{RefHelp}}
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<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
[[Category:Genes with homologs in Oryza gramene ]][[Category:Genes with homologs in Rattus norvegicus ]][[Category:Genes with homologs in Xenopus tropicalis ]][[Category:Genes with homologs in Shigella flexneri ]][[Category:Genes with homologs in E. coli O157]]</noinclude>
===Categories===
{{BacktoTop}}
[[Category:Genes with homologs in Oryza gramene ]]
[[Category:Genes with homologs in Rattus norvegicus ]]
[[Category:Genes with homologs in Xenopus tropicalis ]]
[[Category:Genes with homologs in Shigella flexneri ]]
[[Category:Genes with homologs in E. coli O157]]

Latest revision as of 08:32, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Oryza gramene

  • Q41805 (score: 1.000; bootstrap: 100%)
  • Q9SPM0 (score: 0.620)
  • Q8L3T8 (score: 0.178)
  • Q6YXX5 (score: 0.172)
  • Q5ZB68 (score: 0.170)
  • Q5VR46 (score: 0.167)
  • Q8LJ87 (score: 0.162)
  • Q5Z8W0 (score: 0.156)
  • Q5KQK4 (score: 0.125)
  • Q6F383 (score: 0.106)
  • Q6ZEZ7 (score: 0.105)
  • Q75J37 (score: 0.093)
  • Q7F8X9 (score: 0.068)
  • Q7XR58 (score: 0.068)
  • Q84PC5 (score: 0.068)
  • Q40692 (score: 0.067)
  • Q41719 (score: 0.066)
  • Q01979 (score: 0.064)
  • Q9ZNY1 (score: 0.061)
  • Q42366 (score: 0.059)
  • Q7XQY2 (score: 0.058)
  • P14918 (score: 0.054)
  • Q41814 (score: 0.053)
  • Q6AVC2 (score: 0.052)
  • Q8W265 (score: 0.052)
  • O49870 (score: 0.051)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000000124 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000029276 (score: 1.000; bootstrap: 100%)
  • ENSXETP00000045988 (score: 0.663)
  • ENSXETP00000045372 (score: 0.562)
  • ENSXETP00000015278 (score: 0.550)
  • ENSXETP00000028372 (score: 0.522)
  • ENSXETP00000015667 (score: 0.497)
  • ENSXETP00000007798 (score: 0.349)
  • ENSXETP00000046021 (score: 0.345)
  • ENSXETP00000013954 (score: 0.327)
  • ENSXETP00000031512 (score: 0.251)
  • ENSXETP00000033776 (score: 0.245)
  • ENSXETP00000028661 (score: 0.240)
  • ENSXETP00000023360 (score: 0.216)
  • ENSXETP00000031264 (score: 0.216)
  • ENSXETP00000003624 (score: 0.211)
  • ENSXETP00000016831 (score: 0.208)
  • ENSXETP00000002917 (score: 0.206)
  • ENSXETP00000030437 (score: 0.203)
  • ENSXETP00000016412 (score: 0.196)
  • ENSXETP00000030739 (score: 0.194)
  • ENSXETP00000001655 (score: 0.193)
  • ENSXETP00000028777 (score: 0.189)
  • ENSXETP00000027710 (score: 0.187)
  • ENSXETP00000050098 (score: 0.185)
  • ENSXETP00000032380 (score: 0.174)
  • ENSXETP00000016469 (score: 0.170)
  • ENSXETP00000005802 (score: 0.170)
  • ENSXETP00000029712 (score: 0.157)
  • ENSXETP00000002625 (score: 0.149)
  • ENSXETP00000052478 (score: 0.148)
  • ENSXETP00000011127 (score: 0.140)
  • ENSXETP00000029704 (score: 0.115)
  • ENSXETP00000015678 (score: 0.115)
  • ENSXETP00000007521 (score: 0.114)
  • ENSXETP00000043561 (score: 0.110)
  • ENSXETP00000035410 (score: 0.109)
  • ENSXETP00000009272 (score: 0.109)
  • ENSXETP00000027961 (score: 0.105)
  • ENSXETP00000032396 (score: 0.103)
  • ENSXETP00000048549 (score: 0.101)
  • ENSXETP00000036796 (score: 0.101)
  • ENSXETP00000027557 (score: 0.095)
  • ENSXETP00000019089 (score: 0.092)
  • ENSXETP00000050562 (score: 0.091)
  • ENSXETP00000052158 (score: 0.090)
  • ENSXETP00000042877 (score: 0.087)
  • ENSXETP00000033468 (score: 0.083)
  • ENSXETP00000018693 (score: 0.082)
  • ENSXETP00000022571 (score: 0.078)
  • ENSXETP00000009601 (score: 0.078)
  • ENSXETP00000023764 (score: 0.075)
  • ENSXETP00000021256 (score: 0.073)
  • ENSXETP00000027618 (score: 0.072)
  • ENSXETP00000023532 (score: 0.071)
  • ENSXETP00000022063 (score: 0.069)
  • ENSXETP00000048832 (score: 0.067)
  • ENSXETP00000045229 (score: 0.067)
  • ENSXETP00000000275 (score: 0.067)
  • ENSXETP00000042992 (score: 0.065)
  • ENSXETP00000005609 (score: 0.064)
  • ENSXETP00000034144 (score: 0.063)
  • ENSXETP00000044630 (score: 0.059)
  • ENSXETP00000002630 (score: 0.056)
  • ENSXETP00000011736 (score: 0.055)
  • ENSXETP00000043322 (score: 0.054)
  • ENSXETP00000018815 (score: 0.054)
  • ENSXETP00000001545 (score: 0.054)
  • ENSXETP00000024240 (score: 0.054)
  • ENSXETP00000004917 (score: 0.053)
  • ENSXETP00000022681 (score: 0.053)
  • ENSXETP00000021062 (score: 0.053)

From Inparanoid:20070104

Shigella flexneri

TONB

From SHIGELLACYC

E. coli O157

TONB

From ECOO157CYC

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Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Superfamily (EcoliWiki Page)

SUPERFAMILY:74653

Pfam (EcoliWiki Page)

PF03544 Gram-negative bacterial tonB protein

EcoCyc

EcoCyc:EG11012

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11012

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001001

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1005

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0004196

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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