hinT:Evolution: Difference between revisions

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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="O46abb747980d0"  class=" tableEdit Evolution_homologs_table" 
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!Organism!!Homologs (Statistics)!!Comments
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''Anopheles gambiae''   
''Anopheles gambiae''   
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''Apis mellifera''   
''Apis mellifera''   
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''Arabidopsis thaliana''   
''Arabidopsis thaliana''   
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''Bos taurus''   
''Bos taurus''   
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''Caenorhabditis briggsae''   
''Caenorhabditis briggsae''   
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''Caenorhabditis elegans''   
''Caenorhabditis elegans''   
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''Canis familiaris''   
''Canis familiaris''   
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''Danio rerio''   
''Danio rerio''   
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''Dictyostelium discoideum''   
''Dictyostelium discoideum''   
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''Drosophila melanogaster''   
''Drosophila melanogaster''   
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''Drosophila pseudoobscura''   
''Drosophila pseudoobscura''   
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''Gallus gallus''   
''Gallus gallus''   
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''Homo sapiens''   
''Homo sapiens''   
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''Macaca mulatta''   
''Macaca mulatta''   
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''Monodelphis domestica''   
''Monodelphis domestica''   
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''Mus musculus''   
''Mus musculus''   
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''Oryza gramene''   
''Oryza gramene''   
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''Pan troglodytes''   
''Pan troglodytes''   
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''Rattus norvegicus''   
''Rattus norvegicus''   
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''Saccharomyces cerevisiae''   
''Saccharomyces cerevisiae''   
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''Takifugu rubripes''   
''Takifugu rubripes''   
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''Tetraodon nigroviridis''   
''Tetraodon nigroviridis''   
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''Xenopus tropicalis''   
''Xenopus tropicalis''   
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''Shigella flexneri''   
''Shigella flexneri''   
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''E. coli'' O157  
''E. coli'' O157  
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===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF01230 PF01230  HIT domain]
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[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
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[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23089:SF0 PTHR23089:SF0]
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF01230 PFAM:PF01230]
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=54197 SUPERFAMILY:54197]
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[[EcoCyc]]
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EcoCyc:EG12172
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG12172
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120002067
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB2090
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0003729
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
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<protect><!--Families_notes--></protect>
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===Notes===
===Notes===
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==References==
==References==
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{{BacktoTop}}
{{RefHelp}}
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
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===Categories===
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Latest revision as of 08:31, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000012999 (score: 1.000; bootstrap: 100%)
  • ENSANGP00000029056 (score: 0.179)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000009330 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT3G56490 (score: 1.000; bootstrap: 99%)
  • AT1G31160 (score: 0.391)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000015208 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000014552 (score: 0.255)
  • ENSBTAP00000009924 (score: 0.250)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00040575 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00009002 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000003255 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000001042 (score: 0.220)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-040927-8 (score: 1.000; bootstrap: 99%)
  • ZDB-CDNA-040926-16 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0216234 (score: 1.000; bootstrap: 100%)
  • DDB0219436 (score: 0.792)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0031459 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA15490-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000000583 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000259667 (score: 1.000; bootstrap: 100%)
  • ENSP00000304229 (score: 0.243)
  • ENSP00000310489 (score: 0.143)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000021458 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000013065 (score: 0.073)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000008617 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Mus musculus

  • MGI:1916167 (score: 1.000; bootstrap: 100%)
  • MGI:1321133 (score: 0.240)

From Inparanoid:20070104

Oryza gramene

  • P42856 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000035787 (score: 1.000; bootstrap: 100%)
  • ENSPTRP00000029435 (score: 0.243)
  • ENSPTRP00000033923 (score: 0.162)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000021387 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000000772 (score: 0.229)
  • ENSRNOP00000007437 (score: 0.224)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YDL125C (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000156464 (score: 1.000; bootstrap: 99%)
  • NEWSINFRUP00000155788 (score: 0.259)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00014347001 (score: 1.000; bootstrap: 99%)
  • GSTENP00028994001 (score: 0.264)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000018156 (score: 1.000; bootstrap: 59%)

From Inparanoid:20070104

Shigella flexneri

YCFF

From SHIGELLACYC

E. coli O157

YCFF

From ECOO157CYC

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Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF01230 HIT domain

Panther (EcoliWiki Page)

PTHR23089:SF0

Superfamily (EcoliWiki Page)

SUPERFAMILY:54197

EcoCyc

EcoCyc:EG12172

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12172

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002067

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2090

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0003729

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

[back to top]


See Help:References for how to manage references in EcoliWiki.


Categories

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