pepN:Evolution: Difference between revisions

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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="V46abb3428e3e6"  class=" tableEdit Evolution_homologs_table" 
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!Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
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''Anopheles gambiae''   
''Anopheles gambiae''   
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From Inparanoid:20070104  
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''Apis mellifera''   
''Apis mellifera''   
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''Arabidopsis thaliana''   
''Arabidopsis thaliana''   
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''Bos taurus''   
''Bos taurus''   
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From Inparanoid:20070104  
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''Caenorhabditis briggsae''   
''Caenorhabditis briggsae''   
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From Inparanoid:20070104  
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''Canis familiaris''   
''Canis familiaris''   
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From Inparanoid:20070104  
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''Ciona intestinalis''   
''Ciona intestinalis''   
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''Danio rerio''   
''Danio rerio''   
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From Inparanoid:20070104  
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''Dictyostelium discoideum''   
''Dictyostelium discoideum''   
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From Inparanoid:20070104  
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''Drosophila melanogaster''   
''Drosophila melanogaster''   
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''Gallus gallus''   
''Gallus gallus''   
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''Homo sapiens''   
''Homo sapiens''   
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''Monodelphis domestica''   
''Monodelphis domestica''   
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''Mus musculus''   
''Mus musculus''   
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''Oryza gramene''   
''Oryza gramene''   
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''Pan troglodytes''   
''Pan troglodytes''   
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''Rattus norvegicus''   
''Rattus norvegicus''   
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''Saccharomyces cerevisiae''   
''Saccharomyces cerevisiae''   
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''Schizosaccharomyces pombe''   
''Schizosaccharomyces pombe''   
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''Takifugu rubripes''   
''Takifugu rubripes''   
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''Tetraodon nigroviridis''   
''Tetraodon nigroviridis''   
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''Xenopus tropicalis''   
''Xenopus tropicalis''   
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''Shigella flexneri''   
''Shigella flexneri''   
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From SHIGELLACYC  
From SHIGELLACYC  
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''E. coli'' O157
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PEPN
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From ECOO157CYC
 
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{{Evolution_homologs_table_help}}
 


===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_415452&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_415452&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


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|- {{table_heading_style}}
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF01433 PF01433  Peptidase family M1]
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|-
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[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
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[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11533:SF8 PTHR11533:SF8]
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|-
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=55486 SUPERFAMILY:55486]
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|-
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=63737 SUPERFAMILY:63737]
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|-  
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
|
|
[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF01433 PFAM:PF01433]
[http://pfam.janelia.org/family/PF11940 PF11940  Domain of unknown function (DUF3458)]
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[[EcoCyc]]
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EcoCyc:EG10696
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG10696
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120000688
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB0690
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0003171
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
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<protect><!--Families_notes--></protect>
<protect><!--Families_notes--></protect>
===Notes===
===Notes===
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==References==
==References==
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{{RefHelp}}
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
[[Category:Genes with homologs in Anopheles gambiae ]][[Category:Genes with homologs in Apis mellifera ]][[Category:Genes with homologs in Arabidopsis thaliana ]][[Category:Genes with homologs in Bos taurus ]][[Category:Genes with homologs in Caenorhabditis briggsae ]][[Category:Genes with homologs in Canis familiaris ]][[Category:Genes with homologs in Ciona intestinalis ]][[Category:Genes with homologs in Danio rerio ]][[Category:Genes with homologs in Dictyostelium discoideum ]][[Category:Genes with homologs in Drosophila melanogaster ]][[Category:Genes with homologs in Gallus gallus ]][[Category:Genes with homologs in Homo sapiens ]][[Category:Genes with homologs in Monodelphis domestica ]][[Category:Genes with homologs in Mus musculus ]][[Category:Genes with homologs in Oryza gramene ]][[Category:Genes with homologs in Pan troglodytes ]][[Category:Genes with homologs in Rattus norvegicus ]][[Category:Genes with homologs in Saccharomyces cerevisiae ]][[Category:Genes with homologs in Schizosaccharomyces pombe ]][[Category:Genes with homologs in Takifugu rubripes ]][[Category:Genes with homologs in Tetraodon nigroviridis ]][[Category:Genes with homologs in Xenopus tropicalis ]][[Category:Genes with homologs in Shigella flexneri ]][[Category:Genes with homologs in E. coli O157]]</noinclude>
===Categories===
{{BacktoTop}}
[[Category:Genes with homologs in Anopheles gambiae ]]
[[Category:Genes with homologs in Apis mellifera ]]
[[Category:Genes with homologs in Arabidopsis thaliana ]]
[[Category:Genes with homologs in Bos taurus ]]
[[Category:Genes with homologs in Caenorhabditis briggsae ]]
[[Category:Genes with homologs in Canis familiaris ]]
[[Category:Genes with homologs in Ciona intestinalis ]]
[[Category:Genes with homologs in Danio rerio ]]
[[Category:Genes with homologs in Dictyostelium discoideum ]]
[[Category:Genes with homologs in Drosophila melanogaster ]]
[[Category:Genes with homologs in Gallus gallus ]]
[[Category:Genes with homologs in Homo sapiens ]]
[[Category:Genes with homologs in Monodelphis domestica ]]
[[Category:Genes with homologs in Mus musculus ]]
[[Category:Genes with homologs in Oryza gramene ]]
[[Category:Genes with homologs in Pan troglodytes ]]
[[Category:Genes with homologs in Rattus norvegicus ]]
[[Category:Genes with homologs in Saccharomyces cerevisiae ]]
[[Category:Genes with homologs in Schizosaccharomyces pombe ]]
[[Category:Genes with homologs in Takifugu rubripes ]]
[[Category:Genes with homologs in Tetraodon nigroviridis ]]
[[Category:Genes with homologs in Xenopus tropicalis ]]
[[Category:Genes with homologs in Shigella flexneri ]]
[[Category:Genes with homologs in E. coli O157]]

Latest revision as of 08:31, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000021233 (score: 1.000; bootstrap: 87%)
  • ENSANGP00000012865 (score: 0.900)
  • ENSANGP00000021236 (score: 0.639)
  • ENSANGP00000003366 (score: 0.230)
  • ENSANGP00000023545 (score: 0.217)
  • ENSANGP00000007943 (score: 0.204)
  • ENSANGP00000023446 (score: 0.194)
  • ENSANGP00000025222 (score: 0.193)
  • ENSANGP00000017786 (score: 0.193)
  • ENSANGP00000021306 (score: 0.192)
  • ENSANGP00000025553 (score: 0.190)
  • ENSANGP00000022062 (score: 0.190)
  • ENSANGP00000028917 (score: 0.180)
  • ENSANGP00000004057 (score: 0.179)
  • ENSANGP00000020286 (score: 0.179)
  • ENSANGP00000002729 (score: 0.163)
  • ENSANGP00000026472 (score: 0.149)
  • ENSANGP00000014416 (score: 0.117)
  • ENSANGP00000001203 (score: 0.058)
  • ENSANGP00000019570 (score: 0.056)
  • ENSANGP00000019854 (score: 0.055)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000013649 (score: 1.000; bootstrap: 100%)
  • ENSAPMP00000030882 (score: 0.257)
  • ENSAPMP00000013702 (score: 0.155)
  • ENSAPMP00000016341 (score: 0.111)
  • ENSAPMP00000021637 (score: 0.089)
  • ENSAPMP00000021184 (score: 0.066)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT1G63770 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000026511 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000001164 (score: 0.331)
  • ENSBTAP00000018026 (score: 0.321)
  • ENSBTAP00000010972 (score: 0.195)
  • ENSBTAP00000015199 (score: 0.192)
  • ENSBTAP00000022456 (score: 0.189)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00028571 (score: 1.000; bootstrap: 100%)
  • WBGene00030119 (score: 0.443)
  • WBGene00031083 (score: 0.052)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000009652 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000015520 (score: 0.257)
  • ENSCAFP00000018660 (score: 0.177)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000018878 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-040426-2477 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040425-3424 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040718-269 (score: 0.259)
  • ZDB-GENE-040718-241 (score: 0.259)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0191291 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0015541 (score: 1.000; bootstrap: 100%)
  • FBgn0039640 (score: 0.197)
  • FBgn0040282 (score: 0.195)
  • FBgn0051445 (score: 0.189)
  • FBgn0052473 (score: 0.152)
  • FBgn0038136 (score: 0.142)
  • FBgn0038135 (score: 0.142)
  • FBgn0035226 (score: 0.131)
  • FBgn0030223 (score: 0.127)
  • FBgn0051198 (score: 0.121)
  • FBgn0046253 (score: 0.108)
  • FBgn0051343 (score: 0.102)
  • FBgn0030222 (score: 0.100)
  • FBgn0051233 (score: 0.097)
  • FBgn0039656 (score: 0.080)
  • FBgn0039064 (score: 0.068)
  • FBgn0038897 (score: 0.067)
  • FBgn0051177 (score: 0.064)
  • FBgn0036186 (score: 0.064)
  • FBgn0028935 (score: 0.061)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000018616 (score: 1.000; bootstrap: 100%)
  • ENSGALP00000000506 (score: 0.201)
  • ENSGALP00000013530 (score: 0.196)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000228740 (score: 1.000; bootstrap: 100%)
  • ENSP00000295640 (score: 0.254)
  • ENSP00000270357 (score: 0.140)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000009957 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000000631 (score: 0.277)
  • ENSMODP00000003345 (score: 0.149)

From Inparanoid:20070104

Mus musculus

  • MGI:96836 (score: 1.000; bootstrap: 100%)
  • MGI:2384902 (score: 0.257)
  • MGI:1914170 (score: 0.144)

From Inparanoid:20070104

Oryza gramene

  • Q6ZBX8 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000009041 (score: 1.000; bootstrap: 100%)
  • ENSPTRP00000003083 (score: 0.210)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000005930 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000009198 (score: 0.252)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YNL045W (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPCC13225c (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000164776 (score: 1.000; bootstrap: 68%)
  • NEWSINFRUP00000180368 (score: 0.335)
  • NEWSINFRUP00000177865 (score: 0.283)
  • NEWSINFRUP00000182756 (score: 0.196)
  • NEWSINFRUP00000157582 (score: 0.167)
  • NEWSINFRUP00000148362 (score: 0.149)
  • NEWSINFRUP00000159528 (score: 0.143)
  • NEWSINFRUP00000171131 (score: 0.128)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00005050001 (score: 1.000; bootstrap: 100%)
  • GSTENP00021140001 (score: 0.137)
  • GSTENP00001493001 (score: 0.081)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000051247 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

PEPN

From SHIGELLACYC

E. coli O157

PEPN

From ECOO157CYC

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF01433 Peptidase family M1

Panther (EcoliWiki Page)

PTHR11533:SF8

Superfamily (EcoliWiki Page)

SUPERFAMILY:55486

Superfamily (EcoliWiki Page)

SUPERFAMILY:63737

Pfam (EcoliWiki Page)

PF11940 Domain of unknown function (DUF3458)

EcoCyc

EcoCyc:EG10696

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10696

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000688

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0690

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0003171

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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