hpt:Evolution: Difference between revisions

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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="Q46ab99c093c18"  class=" tableEdit Evolution_homologs_table" 
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!Organism!!Homologs (Statistics)!!Comments
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''Arabidopsis thaliana''   
''Arabidopsis thaliana''   
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''Bos taurus''   
''Bos taurus''   
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''Caenorhabditis briggsae''   
''Caenorhabditis briggsae''   
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''Caenorhabditis elegans''   
''Caenorhabditis elegans''   
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''Canis familiaris''   
''Canis familiaris''   
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''Ciona intestinalis''   
''Ciona intestinalis''   
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''Danio rerio''   
''Danio rerio''   
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''Dictyostelium discoideum''   
''Dictyostelium discoideum''   
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''Gallus gallus''   
''Gallus gallus''   
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''Homo sapiens''   
''Homo sapiens''   
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''Macaca mulatta''   
''Macaca mulatta''   
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''Monodelphis domestica''   
''Monodelphis domestica''   
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''Mus musculus''   
''Mus musculus''   
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''Pan troglodytes''   
''Pan troglodytes''   
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''Rattus norvegicus''   
''Rattus norvegicus''   
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''Takifugu rubripes''   
''Takifugu rubripes''   
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''Tetraodon nigroviridis''   
''Tetraodon nigroviridis''   
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''Xenopus tropicalis''   
''Xenopus tropicalis''   
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''Shigella flexneri''   
''Shigella flexneri''   
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''E. coli'' O157  
''E. coli'' O157  
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===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00156 PF00156  Phosphoribosyl transferase domain]
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[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
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[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22573:SF9 PTHR22573:SF9]
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00156 PFAM:PF00156]
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=53271 SUPERFAMILY:53271]
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[[EcoCyc]]
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EcoCyc:EG20098
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG20098
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120002443
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB4143
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0000440
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
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<protect><!--Families_notes--></protect>
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===Notes===
===Notes===
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==References==
==References==
{{BacktoTop}}
{{BacktoTop}}
{{RefHelp}}
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
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===Categories===
===Categories===
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Latest revision as of 08:29, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Arabidopsis thaliana

  • AT1G71750 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000006872 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000019547 (score: 0.868)
  • ENSBTAP00000030572 (score: 0.801)
  • ENSBTAP00000028120 (score: 0.730)
  • ENSBTAP00000019950 (score: 0.473)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00038963 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00013690 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000027831 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000006328 (score: 0.508)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000006233 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Danio rerio

  • ZDB-CDNA-040425-2865 (score: 1.000; bootstrap: 100%)
  • ZDB-GENE-040426-1918 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040625-14 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040625-25 (score: 0.695)
  • ZDB-GENE-040625-17 (score: 0.695)
  • ZDB-CDNA-040625-196 (score: 0.563)
  • ZDB-GENE-980526-324 (score: 0.563)
  • ZDB-CDNA-040425-380 (score: 0.560)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0216388 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000009829 (score: 1.000; bootstrap: 100%)
  • ENSGALP00000033179 (score: 0.657)
  • ENSGALP00000030603 (score: 0.570)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000298556 (score: 1.000; bootstrap: 100%)
  • ENSP00000318602 (score: 0.579)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000010889 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000019043 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000010875 (score: 0.550)
  • ENSMODP00000002497 (score: 0.345)

From Inparanoid:20070104

Mus musculus

  • MGI:96217 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000004004 (score: 1.000; bootstrap: 100%)
  • ENSPTRP00000041182 (score: 0.239)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000050910 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000037266 (score: 0.560)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000155659 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000176529 (score: 0.378)
  • NEWSINFRUP00000136250 (score: 0.320)
  • NEWSINFRUP00000136242 (score: 0.314)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00028357001 (score: 1.000; bootstrap: 100%)
  • GSTENP00012473001 (score: 0.504)
  • GSTENP00022748001 (score: 0.343)
  • GSTENP00010877001 (score: 0.287)
  • GSTENP00025492001 (score: 0.199)
  • GSTENP00025491001 (score: 0.108)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000042790 (score: 1.000; bootstrap: 100%)
  • ENSXETP00000012985 (score: 0.366)

From Inparanoid:20070104

Shigella flexneri

HPT

From SHIGELLACYC

E. coli O157

HPT

From ECOO157CYC

edit table


Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00156 Phosphoribosyl transferase domain

Panther (EcoliWiki Page)

PTHR22573:SF9

Superfamily (EcoliWiki Page)

SUPERFAMILY:53271

EcoCyc

EcoCyc:EG20098

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG20098

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002443

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB4143

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0000440

Escherichia coli str. K-12 substr. MG1655

edit table


Notes

Links

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References

[back to top]


See Help:References for how to manage references in EcoliWiki.


Categories

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