ileV:Gene Product(s): Difference between revisions

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Latest revision as of 07:18, 27 May 2013

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Gene Product(s)

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name	tRNA-Ile(GAU) (Isoleucine tRNA1)
Synonyms	tRNA-Ile(GAU) (Isoleucine tRNA1)^[1]
Product description
EC number (for enzymes)
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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier	GO ID	GO term name	Reference	Evidence Code	with/from	Aspect	Notes	Status
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type	Partner	Notes	References	Evidence
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment	Description	Evidence	Reference/Source	Notes
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Notes

Structure and Physical Properties

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Physical Properties

Type	tRNA
Sequence	AGGCUUGUAG CUCAGGUGGU UAGAGCGCAC CCCUGAUAAG GGUGAGGUCG GUGGUUCAAG UCCACUCAGG CCUACCA
Mol. Wt	25059.92
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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type	Residues	Description	Notes	References
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Structure

<motif_map/>

See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=ileV taxon=562,83333 </beststructure>

Models

View models at:

PSI-PRED
Genomes TO Protein (GTOP)

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Structure figures

Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type	Source	Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
EcoCyc	EcoCyc:EG30045	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG30045	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120002487	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB4208	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0000679	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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References

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See Help:References for how to manage references in EcoliWiki.

↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)

ileV:Gene Product(s): Difference between revisions

Latest revision as of 07:18, 27 May 2013

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Structure figures

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

Categories

Navigation menu

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 |- {{table_heading_style}}
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 |- {{table heading style}}
 !|Partner Type!!Partner!!Notes!!References!!Evidence
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 |- {{table heading style}}
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+!|Compartment!!Description!!Evidence!!Reference/Source!!Notes
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 <!--box uid=421aa90e079fa326b6494f812ad13e79.19991.S46aa232217008-->
-<span id="Structure"></span><big>'''Structure'''</big>
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+<span id='Structure'></span><big>'''Structure'''</big><br />
+<div style="padding:15px; text-align:right; float:right;"></td>
+<td>
+<!-- motifs column 2-->
+<motif_map/>
+</td>
+</tr>
+</table>
-<div style="padding:15px; text-align:right; float:right;">
 <span class="plainlinks">[[Image:tRNA1.jpg|thumb|250px|Image courtesy of [http://www.sanger.ac.uk/Software/Rfam/index.shtml Rfam]]]</span>
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 *
 ****************************************************************************************** -->{{Product_structure_help}}
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 |-
 !align=left {{table heading style}} |Structures
 ||
-<beststructure>ileV
+<beststructure>
-</beststructure>
+gene=ileV
+taxon=562,83333
+</beststructure>
 |-
 !align=left {{table heading style}} |Models
 ||
 View models at:
-* [http://dragon.bio.purdue.edu/ecolpredict2/localsearch/cgi-bin/search3.cgi?q=ileV&sub=keywordSearc EcoliPredict]
-* [http://modbase.compbio.ucsf.edu/modbase-cgi/model_search.cgi?searchmode=default&displaymode=moddetail&searchproperties=ALL&searchvalue=ileV&organism=562&organismtext= ModBase]
 * [http://bioinf.cs.ucl.ac.uk/psipred/ PSI-PRED]
-* [http://www.ebi.ac.uk/msd-srv/pqs/ Protein Quaternary Structure] (PQS)
 * [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)
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 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.19991.D46a7b45397a88-->
-<!--Structure_notes--></protect>
+</td><td></protect>
+==== Structure figures ====
+<protect><!--          ***** PLEASE DO NOT EDIT BELOW THIS LINE *****         -->
+</td><tr><table><!--Structure_notes--></protect>
 ===Notes===
@@ Line 228: / Line 256: @@
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 *
 ****************************************************************************************** -->{{Gene_accessions_help}}
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 |- {{table_heading_style}}
 !|Database!!Accession!!Notes
+|-
+|
+[[EcoCyc]]
+|
+EcoCyc:EG30045
+|
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
+|-
+|
+[[EcoGene]]
+|
+EcoGene:EG30045
+|
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
+|-
+|
+[[RegulonDB]]
+|
+RegulonDB:ECK120002487
+|
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
+|-
+|
+[[EchoBASE]]
+|
+EchoBASE:EB4208
+|
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
+|-
+|
+[[ASAP]]
+|
+ASAP:ABE-0000679
+|
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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 <!--box uid=421aa90e079fa326b6494f812ad13e79.19991.I46a7b4544c5da-->
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 ==References==
 {{BacktoTop}}
+{{RefHelp}}
-<references/>
+<references />
 __NOTOC__
-</noinclude>
 ===Categories===
 {{BacktoTop}}

ileV:Gene Product(s): Difference between revisions

Latest revision as of 07:18, 27 May 2013

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Structure figures

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

Categories

Navigation menu

Search