ileV:Gene Product(s): Difference between revisions

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|{{Sub}}[[#Localization |Localization]]
|{{Sub}}[[#Localization |Localization]]
|{{Sub}}[[#Sequence|Sequence]]
|{{Sub}}[[#Sequence|Sequence]]
|{{Sub}}[[#Domains/Motifs/Modification Sites|Domains]]
|{{Sub}}[[#Structure|Structure]]
|{{Sub}}[[#Structure|Structure]]
|{{Sub}}[[#Gene Product Resources|Resources]]
|{{Sub}}[[#Gene Product Resources|Resources]]
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==Nomenclature==
==Nomenclature==
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|-
|-
!{{table heading style}} |Standard name
!align=left {{table heading style}} |Standard name
|
||
tRNA-Ile(GAU) (Isoleucine tRNA1)  
tRNA-Ile(GAU) (Isoleucine tRNA1)  
|-
|-
!{{table heading style}} |Synonyms
!align=left {{table heading style}} |Synonyms
|
||
tRNA-Ile(GAU) (Isoleucine tRNA1) product<ref name='LIB:Riley_2006'/>  
tRNA-Ile(GAU) (Isoleucine tRNA1)<ref name='LIB:Riley_2006'/>  
|-
|-
!{{table heading style}} |Product description
!align=left {{table heading style}} |Product description
|
||




|-
|-
!{{table heading style}} |EC number (for enzymes)
!align=left {{table heading style}} |EC number (for enzymes)
|
||
*
 
|-
 
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===Notes===
===Notes===
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<protect>
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<big>'''Gene Ontology'''</big>
<big>'''Gene Ontology'''</big><br /><!--box uid=421aa90e079fa326b6494f812ad13e79.19991.V46aa231f95406-->
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!Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
!|Qualifier!!GO ID!!GO term name!!Reference!!Evidence Code!!with/from!!Aspect!!Notes!!Status
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<span id="Interactions"></span><big>'''Interactions'''</big>
<span id="Interactions"></span><big>'''Interactions'''</big>
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|- {{table heading style}}
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!Partner Type!!Partner!!Notes
!|Partner Type!!Partner!!Notes!!References!!Evidence
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===Notes===
===Notes===
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==Localization==
==Localization==
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!Compartment!!Description!!Evidence!!Notes
!|Compartment!!Description!!Evidence!!Reference/Source!!Notes
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<span id="Sequence"></span><big>'''Physical Properties'''</big>
<span id="Sequence"></span><big>'''Physical Properties'''</big>
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!{{table heading style}} |Sequence
!align=left {{table heading style}} |Type
|
||
[http://biocyc.org/ECOLI/sequence-rna?type=GENERIC-RNA&object= at EcoCyc] 
tRNA
|-
|-
!{{table heading style}} |Mol. Wt
!align=left {{table heading style}} |Sequence
|
||
<pre>AGGCUUGUAG CUCAGGUGGU UAGAGCGCAC CCCUGAUAAG GGUGAGGUCG GUGGUUCAAG
UCCACUCAGG CCUACCA
</pre>
|-
|-
!{{table heading style}} |pI
!align=left {{table heading style}} |Mol. Wt
|
||
25059.92
|-
 
!{{table heading style}} |Extinction coefficient
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<big>'''Domains/Motifs/Modification Sites'''</big>
 
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!|Type!!Residues!!Description!!Notes!!References
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<span id="Structure"></span><big>'''Structure'''</big>
 
<table><tr valign='top'><td>
<span id='Structure'></span><big>'''Structure'''</big><br />
 
<div style="padding:15px; text-align:right; float:right;"></td>
<td>
<!-- motifs column 2-->
<motif_map/>
</td>
</tr>
</table>
 
<span class="plainlinks">[[Image:tRNA1.jpg|thumb|250px|Image courtesy of [http://www.sanger.ac.uk/Software/Rfam/index.shtml Rfam]]]</span>
</div>
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|-
!align=left {{table heading style}} |Structures
||
<beststructure>
gene=ileV
taxon=562,83333
</beststructure>
|-
!align=left {{table heading style}} |Models
||
View models at:
* [http://bioinf.cs.ucl.ac.uk/psipred/ PSI-PRED]
* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)
 
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<!--Structure_notes--></protect>
</td><td></protect>
==== Structure figures ====
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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===Notes===
===Notes===


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===Notes===
===Notes===
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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|
[[EcoCyc]]
|
EcoCyc:EG30045
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EcoGene]]
|
EcoGene:EG30045
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[RegulonDB]]
|
RegulonDB:ECK120002487
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EchoBASE]]
|
EchoBASE:EB4208
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[ASAP]]
|
ASAP:ABE-0000679
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
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===Notes===
===Notes===
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<noinclude>
<noinclude>
==References==
==References==
{{BacktoTop}}
{{BacktoTop}}
{{RefHelp}}
{{RefHelp}}
<references/>
<references />
__NOTOC__
__NOTOC__
</noinclude>
===Categories===
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Latest revision as of 07:18, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

tRNA-Ile(GAU) (Isoleucine tRNA1)

Synonyms

tRNA-Ile(GAU) (Isoleucine tRNA1)[1]

Product description


EC number (for enzymes)


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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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Physical Properties

Type

tRNA

Sequence 
AGGCUUGUAG CUCAGGUGGU UAGAGCGCAC CCCUGAUAAG GGUGAGGUCG GUGGUUCAAG
UCCACUCAGG CCUACCA
Mol. Wt

25059.92

edit table


Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References
edit table


Structure

<motif_map/>

Image courtesy of Rfam

See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=ileV taxon=562,83333 </beststructure>

Models

View models at:

edit table

Structure figures

Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG30045

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG30045

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002487

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB4208

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0000679

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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  1. ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)

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