Cis Element:TerC: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
Table edited by Bmcintosh via TableEdit
touch
 
(5 intermediate revisions by 2 users not shown)
Line 8: Line 8:
*  
*  
****************************************************************************************** -->
****************************************************************************************** -->
{|border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  
{|   id="F4989e9bc574e7" class=" tableEdit Cis_element_summary_table"


|-
|-
!align=left {{table_heading_style}} |Standard Name
!align=left {{table_heading_style}} |Standard Name
||
||
TerC
<i>TerC</i>
|-
|-
!align=left {{table_heading_style}} |Synonyms
!align=left {{table_heading_style}} |Synonyms
||
||
psrA
<i>psrA</i>
|-
|-
!align=left {{table_heading_style}} |Function
!align=left {{table_heading_style}} |Function
Line 31: Line 31:




|-class='sortbottom'
|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.149473.F4989e9bc574e7&page=149473&pagename={{FULLPAGENAMEE}}&type=1&template=Cis_element_summary_table edit table] ||
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.149473.F4989e9bc574e7&page=149473&pagename={{FULLPAGENAMEE}}&type=1&template=Cis_element_summary_table edit table]</span> ||
|}
|}
<!--box uid=63ce1649aab8b3180235b0af7618f667.149473.F4989e9bc574e7--></protect>
<!--box uid=63ce1649aab8b3180235b0af7618f667.149473.F4989e9bc574e7--></protect>
Line 46: Line 46:
*  
*  
****************************************************************************************** -->{{Gene_location_help}}
****************************************************************************************** -->{{Gene_location_help}}
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="D4989e9bc59765"  class=" tableEdit Gene_location_table"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
|-  
|-  
|
|
[http://ecoliwiki.net/dev/index.php/MG1655 MG1655]
[http://ecoliwiki.net/colipedia/index.php/MG1655 MG1655]
|
|
34.6 minutes
34.6 minutes
Line 61: Line 61:
{{GBrowseFastaLink|ecoli|NC_000913|1607181|1607203|FASTA Dump}}  
{{GBrowseFastaLink|ecoli|NC_000913|1607181|1607203|FASTA Dump}}  


|-class='sortbottom'
|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.149473.D4989e9bc59765&page=149473&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_location_table edit table] || || || ||
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.149473.D4989e9bc59765&page=149473&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_location_table edit table]</span> || || || ||
|}
|}
<!--box uid=63ce1649aab8b3180235b0af7618f667.149473.D4989e9bc59765--></protect>
<!--box uid=63ce1649aab8b3180235b0af7618f667.149473.D4989e9bc59765--></protect>
Line 77: Line 77:
*  
*  
****************************************************************************************** -->{{Product_interactions_help}}
****************************************************************************************** -->{{Product_interactions_help}}
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="U4989e9bc5aafd"  class=" tableEdit Product_interactions_table dataTable"   
|- {{table heading style}}
|- {{table heading style}}
!|Partner Type!!Partner!!Notes!!References!!Evidence
!|Partner Type!!Partner!!Notes!!References!!Evidence


|-class='sortbottom'
|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.149473.U4989e9bc5aafd&page=149473&pagename={{FULLPAGENAMEE}}&type=0&template=Product_interactions_table edit table] || || || ||
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.149473.U4989e9bc5aafd&page=149473&pagename={{FULLPAGENAMEE}}&type=0&template=Product_interactions_table edit table]</span> || || || ||
|}
|}
<!--box uid=63ce1649aab8b3180235b0af7618f667.149473.U4989e9bc5aafd--></protect>
<!--box uid=63ce1649aab8b3180235b0af7618f667.149473.U4989e9bc5aafd--></protect>
Line 97: Line 97:
*  
*  
****************************************************************************************** -->
****************************************************************************************** -->
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="A4989e9bc5be30"  class=" tableEdit Cis_Element_allele_table"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Allele!!Nt change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
!|Allele!!Nt change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments


|-class='sortbottom'
|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.149473.A4989e9bc5be30&page=149473&pagename={{FULLPAGENAMEE}}&type=0&template=Cis_Element_allele_table edit table] || || || || || ||
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.149473.A4989e9bc5be30&page=149473&pagename={{FULLPAGENAMEE}}&type=0&template=Cis_Element_allele_table edit table]</span> || || || || || ||
|}
|}
<!--box uid=63ce1649aab8b3180235b0af7618f667.149473.A4989e9bc5be30--></protect>
<!--box uid=63ce1649aab8b3180235b0af7618f667.149473.A4989e9bc5be30--></protect>
Line 117: Line 117:
*  
*  
****************************************************************************************** -->{{Gene_resources_help}}
****************************************************************************************** -->{{Gene_resources_help}}
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="S4989e9bc5d07c"  class=" tableEdit Gene_resource_table"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Resource!!Resource Type!!Source!!Notes/Reference
!|Resource!!Resource Type!!Source!!Notes/Reference


|-class='sortbottom'
|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.149473.S4989e9bc5d07c&page=149473&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_resource_table edit table] || || ||
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.149473.S4989e9bc5d07c&page=149473&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_resource_table edit table]</span> || || ||
|}
|}
<!--box uid=63ce1649aab8b3180235b0af7618f667.149473.S4989e9bc5d07c--></protect>  
<!--box uid=63ce1649aab8b3180235b0af7618f667.149473.S4989e9bc5d07c--></protect>  
Line 136: Line 136:
*  
*  
****************************************************************************************** -->{{Gene_accessions_help}}
****************************************************************************************** -->{{Gene_accessions_help}}
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="U4989e9bc5e29d"  class=" tableEdit Gene_accessions_table"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
Line 146: Line 146:
|
|
   
   
|-
|
[[EcoCyc]]
|
EcoCyc:
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EcoGene]]
|
EcoGene:
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[RegulonDB]]
|
RegulonDB:
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EchoBASE]]
|
EchoBASE:
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[ASAP]]
|
ASAP:
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


|-class='sortbottom'
|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.149473.U4989e9bc5e29d&page=149473&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.149473.U4989e9bc5e29d&page=149473&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table]</span> || ||
|}
|}
<!--box uid=63ce1649aab8b3180235b0af7618f667.149473.U4989e9bc5e29d--></protect>
<!--box uid=63ce1649aab8b3180235b0af7618f667.149473.U4989e9bc5e29d--></protect>
Line 157: Line 192:
{{BacktoTop}}
{{BacktoTop}}
{{RefHelp}}
{{RefHelp}}
<references/>
<references />


===Categories===
===Categories===
[[Category:Cis Element|TerC]]
[[Category:Cis Element|TerC]]

Latest revision as of 07:17, 27 May 2013

Cis element summary table

Standard Name

TerC

Synonyms

psrA

Function

Terminus of DNA replication

Location

34.6 minutes in MG1655

SO terms


Notes

Location and Sequence

[back to top]


See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

34.6 minutes

MG1655: 1607181..1607203
gbrowse_img.php?coord=1607181..1607203&genome=ecoli&name=MG1655&trackset=DNA_unlabeled&width=300&.png


Notes

Interactions

[back to top]


See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence


Notes

Mutant alleles and phenotypes

[back to top]


Allele Nt change(s) Phenotype: Type Phenotype: Description Reference Availability Comments


Notes

Genetic Resources

[back to top]


See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

Notes

Accessions

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

eric

TerC

EcoCyc

EcoCyc:

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:

Escherichia coli str. K-12 substr. MG1655


Notes

References

[back to top]


See Help:References for how to manage references in EcoliWiki.


Categories