Template:GO table product: Difference between revisions

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This is a [[Special:TableEdit|TableEdit]] table template.
<pre>
 
<headings>
<template>
Qualifier||qualifier|select||NOT|Contributes to|Colocalizes with|Obsolete GO term|Under review|Deprecated
 
GO ID||go_id|text
  <column>
GO term name||go_term|GoTermLookup
    <heading>Qualifier</heading>
Reference||refs|dbxref|unique|PMID|GO_REF|other
    <name>qualifier</name>
Evidence Code||evidence|select| |EXP: Inferred from Experiment|IDA: Inferred from Direct Assay|IPI: Inferred from Physical Interaction|IMP: Inferred from Mutant Phenotype|IGI: Inferred from Genetic Interaction|IEP: Inferred from Expression Pattern|ISS: Inferred from Sequence or Structural Similarity|ISO: Inferred from Sequence Orthology|ISA: Inferred from Sequence Alignment|ISM: Inferred from Sequence Model|IGC: Inferred from Genomic Context|IBA: Inferred from Biological Aspect of Ancestor|IBD: Inferred from Biological Aspect of Descendant|IKR: Inferred from Key Residues|IRD: Inferred from Rapid Divergence|RCA: inferred from Reviewed Computational Analysis|TAS: Traceable Author Statement|NAS: Non-traceable Author Statement|IC: Inferred by Curator|ND: No Biological Data Available|IEA: Inferred from Electronic Annotation
    <desc>Flags that modify the interpretation of an annotation.</desc>
with/from||with|go_annotation|EcoliWiki|UniProtKB|InterPro|EcoCyc|GO|PMID|NCBI
    <format>select</format>
Aspect||aspect|AspectLookup
    <params>
Notes||Notes
      <option> </option>
Status||status|go_annotation
      <option>NOT</option>
</headings>
      <option>Contributes to</option>
<heading_style>{{table_heading_style}}</heading_style>
      <option>Contributes to</option>
      <option>Colocalizes with</option>
      <option>Obsolete GO term</option>
      <option>Under review</option>
      <option>Deprecated</option>
    </params>
  </column>
 
  <column>
    <heading>GO ID</heading>
    <name>go_id</name>
    <desc>A unique number associated with each GO term.</desc>
    <format>text</format>
  </column>
 
  <column>
    <heading>GO term name</heading>
    <name>go_term</name>
    <desc>The name of the GO term.</desc>
    <format>go_term_lookup</format>
  </column>
 
  <column>
    <heading>Reference(s)</heading>
    <name>refs</name>
    <desc>One or more unique identifiers for a single source cited as an authority for the attribution of the GO ID to this gene product. This may be a literature reference or a database record. The syntax is DB:accession_number.</desc>
    <format>textarea</format>
  </column>
 
  <column>
    <heading>Evidence Code</heading>
    <name>evidence</name>
    <desc>see [http://www.geneontology.org/GO.evidence.shtml GO evidence code documentation].</desc>
    <format>select</format>
    <params>
      <option> </option>
      <option>IDA: Inferred from Direct Assay</option>
      <option>IPI: Inferred from Physical Interaction</option>
      <option>IMP: Inferred from Mutant Phenotype</option>
      <option>IGI: Inferred from Genetic Interaction</option>
      <option>IEP: Inferred from Expression Pattern</option>
      <option>ISS: Inferred from Sequence or Structural Similarity</option>
      <option>ISO: Inferred from Sequence Orthology</option>
      <option>ISA: Inferred from Sequence Alignment</option>
      <option>ISM: Inferred from Sequence Model</option>
      <option>IGC: Inferred from Genomic Context</option>
      <option>RCA: inferred from Reviewed Computational Analysis</option>
      <option>TAS: Traceable Author Statement</option>
      <option>NAS: Non-traceable Author Statement</option>
      <option>IC: Inferred by Curator</option>
      <option>ND: No biological Data available</option>
      <option>IEA: Inferred from Electronic Annotation</option>
  </params>
  </column>
 
  <column>
    <heading>with/from</heading>
    <name>with</name>
    <desc>This field is used to hold an additional identifier for annotations using certain evidence codes (IC, IEA, IGI, IPI, ISS). For example, it can identify another gene product to which the annotated gene product is similar (ISS) or interacts with (IPI).</desc>
    <format>go_annotation_with</format>
  </column>
 
  <column>
    <heading>Aspect</heading>
    <name>aspect</name>
    <desc>Refers to the namespace or ontology to which the GO ID (column 5) belongs; one of P (biological process), F (molecular function) or C (cellular component)</desc>
    <format>display</format>
  </column>
 
  <column>
    <heading>Notes</heading>
    <name>notes</name>
    <desc>Free text area for user notes. (Not included in the monthly submital to GO.)</desc>
    <format>textarea</format>
  </column>
 
  <column>
    <heading>Status</heading>
    <name>status</name>
    <desc>Informs the user which is remaining of the three needed fields.</desc>
    <format>display</format>
  </column>
 
  <above>{{Product_GO_help}}</above>
 
  <help1>{{Product_GO_help}}</help1>
 
  <datatable>1</datatable>
 
</template>
[[Category:Table templates|GO table product]]
[[Category:Table templates|GO table product]]
<above>{{Product_GO_help}}</above>
<help1>{{Product_GO_help}}</help1>
<datatable>1</datatable>
</pre>
[[Category:Table_templates]]

Latest revision as of 18:38, 15 April 2013

<headings>
Qualifier||qualifier|select||NOT|Contributes to|Colocalizes with|Obsolete GO term|Under review|Deprecated
GO ID||go_id|text
GO term name||go_term|GoTermLookup
Reference||refs|dbxref|unique|PMID|GO_REF|other
Evidence Code||evidence|select| |EXP: Inferred from Experiment|IDA: Inferred from Direct Assay|IPI: Inferred from Physical Interaction|IMP: Inferred from Mutant Phenotype|IGI: Inferred from Genetic Interaction|IEP: Inferred from Expression Pattern|ISS: Inferred from Sequence or Structural Similarity|ISO: Inferred from Sequence Orthology|ISA: Inferred from Sequence Alignment|ISM: Inferred from Sequence Model|IGC: Inferred from Genomic Context|IBA: Inferred from Biological Aspect of Ancestor|IBD: Inferred from Biological Aspect of Descendant|IKR: Inferred from Key Residues|IRD: Inferred from Rapid Divergence|RCA: inferred from Reviewed Computational Analysis|TAS: Traceable Author Statement|NAS: Non-traceable Author Statement|IC: Inferred by Curator|ND: No Biological Data Available|IEA: Inferred from Electronic Annotation
with/from||with|go_annotation|EcoliWiki|UniProtKB|InterPro|EcoCyc|GO|PMID|NCBI
Aspect||aspect|AspectLookup
Notes||Notes
Status||status|go_annotation
</headings>
<heading_style>{{table_heading_style}}</heading_style>
[[Category:Table templates|GO table product]]
<above>{{Product_GO_help}}</above>
<help1>{{Product_GO_help}}</help1>
<datatable>1</datatable>
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