sdhB:Evolution: Difference between revisions

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Adding evolution_families_table to Evolution pages.
 
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{|class = 'sortable' {{Prettytable}} id='208151'
{|  id="V46abab3fe68cd"  class=" tableEdit Evolution_homologs_table" 
|- {{table heading style}}
|- {{table heading style}}
!Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
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''Anopheles gambiae''   
''Anopheles gambiae''   
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''Apis mellifera''   
''Apis mellifera''   
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''Arabidopsis thaliana''   
''Arabidopsis thaliana''   
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From Inparanoid:20070104  
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''Bos taurus''   
''Bos taurus''   
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From Inparanoid:20070104  
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''Caenorhabditis briggsae''   
''Caenorhabditis briggsae''   
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''Caenorhabditis elegans''   
''Caenorhabditis elegans''   
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''Canis familiaris''   
''Canis familiaris''   
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''Ciona intestinalis''   
''Ciona intestinalis''   
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From Inparanoid:20070104  
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''Dictyostelium discoideum''   
''Dictyostelium discoideum''   
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''Drosophila melanogaster''   
''Drosophila melanogaster''   
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''Drosophila pseudoobscura''   
''Drosophila pseudoobscura''   
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''Gallus gallus''   
''Gallus gallus''   
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''Homo sapiens''   
''Homo sapiens''   
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''Macaca mulatta''   
''Macaca mulatta''   
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''Monodelphis domestica''   
''Monodelphis domestica''   
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''Mus musculus''   
''Mus musculus''   
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''Oryza gramene''   
''Oryza gramene''   
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''Pan troglodytes''   
''Pan troglodytes''   
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''Rattus norvegicus''   
''Rattus norvegicus''   
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''Saccharomyces cerevisiae''   
''Saccharomyces cerevisiae''   
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''Schizosaccharomyces pombe''   
''Schizosaccharomyces pombe''   
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''Takifugu rubripes''   
''Takifugu rubripes''   
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''Tetraodon nigroviridis''   
''Tetraodon nigroviridis''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Xenopus tropicalis''   
''Xenopus tropicalis''   
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''Shigella flexneri''   
''Shigella flexneri''   
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From SHIGELLACYC  
From SHIGELLACYC  
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''E. coli'' O157  
''E. coli'' O157  
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From ECOO157CYC  
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|[{{SERVER}}{{SCRIPTPATH}}/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.45413.V46abab3fe68cd&page=45413&pagename={{FULLPAGENAMEE}} edit table] || ||
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{{Evolution_homologs_table_help}}


===Do-It-Yourself Web Tools===
<protect><!--Families_notes--></protect>
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_415252&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
 
<protect><!--Homology_notes--></protect>
===Notes===
===Notes===


==Families==
==Families==
{{BacktoTop}}
{{BacktoTop}}
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<!--
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*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
*
*  
****************************************************************************************** -->
****************************************************************************************** -->{{Evolution_families_table_help}}
{|class = 'sortable' {{Prettytable}} id='208151'
{|  id="M4c604eade8ef6"  class=" tableEdit Evolution_families_table" 
|- {{table heading style}}
|- {{table heading style}}
!Organism!!Homologs (Statistics)!!Comments
!|Database!!Accession!!Notes
|-
 
|
|- class="tableEdit_footer"
''Anopheles gambiae'' 
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.45413.M4c604eade8ef6&page=45413&pagename={{FULLPAGENAMEE}}&type=0&template=Evolution_families_table edit table]</span> || ||
|
* ENSANGP00000024398 (score: 1.000; bootstrap: 100%)
|
From Inparanoid:20070104
|-
|
''Apis mellifera'' 
|
* ENSAPMP00000018948 (score: 1.000; bootstrap: 100%)
* ENSAPMP00000010479 (score: 0.144)
|
From Inparanoid:20070104
|-
|
''Arabidopsis thaliana'' 
|
* AT5G40650 (score: 1.000; bootstrap: 100%)
* AT3G27380 (score: 0.869)
* AT5G65165 (score: 0.185)
|
From Inparanoid:20070104
|-
|
''Bos taurus'' 
|
* ENSBTAP00000010949 (score: 1.000; bootstrap: 100%)
|
From Inparanoid:20070104
|-
|
''Caenorhabditis briggsae'' 
|
* WBGene00024197 (score: 1.000; bootstrap: 100%)
|
From Inparanoid:20070104
|-
|
''Caenorhabditis elegans'' 
|
* WBGene00006433 (score: 1.000; bootstrap: 100%)
|
From Inparanoid:20070104
|-
|
''Canis familiaris'' 
|
* ENSCAFP00000023278 (score: 1.000; bootstrap: 99%)
|
From Inparanoid:20070104
|-
|
''Ciona intestinalis'' 
|
* ENSCINP00000014095 (score: 1.000; bootstrap: 100%)
|
From Inparanoid:20070104
|-
|
''Dictyostelium discoideum'' 
|
* DDB0231383 (score: 1.000; bootstrap: 100%)
|
From Inparanoid:20070104
|-
|
''Drosophila melanogaster'' 
|
* FBgn0014028 (score: 1.000; bootstrap: 100%)
* FBgn0030975 (score: 0.407)
|
From Inparanoid:20070104
|-
|
''Drosophila pseudoobscura'' 
|
* GA17170-PA (score: 1.000; bootstrap: 100%)
* GA20284-PA (score: 0.370)
|
From Inparanoid:20070104
|-
|
''Gallus gallus'' 
|
* ENSGALP00000000693 (score: 1.000; bootstrap: 100%)
|
From Inparanoid:20070104
|-
|
''Homo sapiens'' 
|
* ENSP00000235768 (score: 1.000; bootstrap: 100%)
|
From Inparanoid:20070104
|-
|
''Macaca mulatta'' 
|
* ENSMMUP00000002161 (score: 1.000; bootstrap: 100%)
* ENSMMUP00000012415 (score: 0.788)
|
From Inparanoid:20070104
|-
|
''Monodelphis domestica'' 
|
* ENSMODP00000003371 (score: 1.000; bootstrap: 100%)
|
From Inparanoid:20070104
|-
|
''Mus musculus'' 
|
* MGI:1914930 (score: 1.000; bootstrap: 100%)
|
From Inparanoid:20070104
|-
|
''Oryza gramene'' 
|
* Q6H4G3 (score: 1.000; bootstrap: 100%)
* Q84VR9 (score: 0.255)
* Q9XGC8 (score: 0.253)
* Q9S827 (score: 0.244)
* Q84VR8 (score: 0.126)
* Q9S7D3 (score: 0.120)
* Q9XGC7 (score: 0.120)
|
From Inparanoid:20070104
|-
|
''Pan troglodytes'' 
|
* ENSPTRP00000000434 (score: 1.000; bootstrap: 100%)
|
From Inparanoid:20070104
|-
|
''Rattus norvegicus'' 
|
* ENSRNOP00000010593 (score: 1.000; bootstrap: 100%)
|
From Inparanoid:20070104
|-
|
''Saccharomyces cerevisiae'' 
|
* YLL041C (score: 1.000; bootstrap: 100%)
|
From Inparanoid:20070104
|-
|
''Schizosaccharomyces pombe'' 
|
* SPAC1401 (score: 1.000; bootstrap: 100%)
|
From Inparanoid:20070104
|-
|
''Takifugu rubripes'' 
|
* NEWSINFRUP00000130511 (score: 1.000; bootstrap: 100%)
* NEWSINFRUP00000136891 (score: 0.804)
|
From Inparanoid:20070104
|-
|
''Tetraodon nigroviridis'' 
|
* GSTENP00020587001 (score: 1.000; bootstrap: 100%)
* GSTENP00027350001 (score: 0.764)
|
From Inparanoid:20070104
|-
|
''Xenopus tropicalis'' 
|
* ENSXETP00000029442 (score: 1.000; bootstrap: 100%)
|
From Inparanoid:20070104
|-
|
''Shigella flexneri'' 
|
SDHB
|
From SHIGELLACYC
|-
|
''E. coli'' O157
|
SDHB
|
From ECOO157CYC
|-class='sortbottom'
|[{{SERVER}}{{SCRIPTPATH}}/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.45413.V46abab3fe68cd&page=45413&pagename={{FULLPAGENAMEE}} edit table] || ||
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{{Evolution_families_table_help}}
<protect><!--Families_notes--></protect>
<protect><!--Families_notes--></protect>
===Notes===
===Notes===


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*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
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==References==
==References==
{{BacktoTop}}
{{BacktoTop}}
{{RefHelp}}
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
</noinclude>
===Categories===
===Categories===
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Latest revision as of 18:53, 9 August 2010

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000024398 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000018948 (score: 1.000; bootstrap: 100%)
  • ENSAPMP00000010479 (score: 0.144)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT5G40650 (score: 1.000; bootstrap: 100%)
  • AT3G27380 (score: 0.869)
  • AT5G65165 (score: 0.185)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000010949 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00024197 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00006433 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000023278 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000014095 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0231383 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0014028 (score: 1.000; bootstrap: 100%)
  • FBgn0030975 (score: 0.407)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA17170-PA (score: 1.000; bootstrap: 100%)
  • GA20284-PA (score: 0.370)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000000693 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000235768 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000002161 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000012415 (score: 0.788)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000003371 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Mus musculus

  • MGI:1914930 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Oryza gramene

  • Q6H4G3 (score: 1.000; bootstrap: 100%)
  • Q84VR9 (score: 0.255)
  • Q9XGC8 (score: 0.253)
  • Q9S827 (score: 0.244)
  • Q84VR8 (score: 0.126)
  • Q9S7D3 (score: 0.120)
  • Q9XGC7 (score: 0.120)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000000434 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000010593 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YLL041C (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPAC1401 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000130511 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000136891 (score: 0.804)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00020587001 (score: 1.000; bootstrap: 100%)
  • GSTENP00027350001 (score: 0.764)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000029442 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

SDHB

From SHIGELLACYC

E. coli O157

SDHB

From ECOO157CYC

edit table


Notes

Families

[back to top]


See Help:Evolution_families for help entering or editing information in this section of EcoliWiki.

Database Accession Notes
edit table


Notes

Links

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References

[back to top]


See Help:References for how to manage references in EcoliWiki.


Categories

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