ExPASy proteomics server: Difference between revisions
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{{Pagetop}} | {{Pagetop}} | ||
[[Category:Databases]] | [[Category:Databases]] | ||
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* ** PLEASE DON'T EDIT THIS TABLE DIRECTLY. Use the edit table link under the table. ** | |||
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{| {{Prettytable}} width='30%' align="right" id="D4a2590b05b470" class=" tableEdit Database_table" | |||
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!align=left {{table heading style}} |Link/URL: | |||
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[http://ca.expasy.org/ ca.expasy.org] | |||
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!align=left {{table heading style}} |What: | |||
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Analysis of protein sequences and structures. | |||
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| | !align=left {{table heading style}} |Who: | ||
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Swiss Institute for Bioinformatics | |||
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| Updates | !align=left {{table heading style}} |Updates: | ||
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<i>Last Updated: Aug 2008</i> | |||
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| Upcoming events | !align=left {{table heading style}} |Upcoming events: | ||
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| Web Services | !align=left {{table heading style}} |Web Services: | ||
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|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.1675.D4a2590b05b470&page=1675&pagename={{FULLPAGENAMEE}}&type=1&template=Database_table edit table]</span> || | |||
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<!--box uid=63ce1649aab8b3180235b0af7618f667.1675.D4a2590b05b470--></protect> | |||
=About {{PAGENAME}}= | =About {{PAGENAME}}= | ||
The [http://www.expasy.org/ {{PAGENAME}}] is the site people mean when they talk about SwissProt. In fact, the website is a portal to several proteome-related services provided by the Swiss Institute for Bioinformatics in collaboration, in many cases, with the [http://www.ebi.ac.uk/ European Bioinformatics Institute] (EBI). | |||
[http://www.expasy.org/ | |||
=Content= | =Content= | ||
Major database components of the {{PAGENAME}} include: | |||
*[http://ca.expasy.org/sprot/ UniProt KnowledgeBase] ([[UniProt|EcoliWiki Page]]) :a curated protein sequence database which strives to provide a high level of annotation (such as the description of the function of a protein, its domains structure, post-translational modifications, variants, etc.), a minimal level of redundancy and high level of integration with other databases. | |||
*[http://swissmodel.expasy.org/repository/ SWISS-MODEL] ([[SwissModel|EcoliWiki Page]]):a database of annotated three-dimensional comparative protein structure models generated by the fully automated homology-modelling pipeline SWISS-MODEL. | |||
*[http://ca.expasy.org/ch2d/ SWISS-2DPAGE] :contains data on proteins identified on various 2-D PAGE and SDS-PAGE reference maps. | |||
*[http://ca.expasy.org/enzyme/ ENZYME] :a repository of information relative to the nomenclature of enzymes. | |||
Expasy also provides many online software tools. | |||
=Using {{PAGENAME}}= | =Using {{PAGENAME}}= | ||
==Browsing== | ==Browsing== | ||
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=References= | =References= | ||
<references/> | {{BacktoTop}} | ||
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=External Links= | =External Links= | ||
[http://www.expasy.org/ {{PAGENAME}}] URL: http://www.expasy.org | [http://www.expasy.org/ {{PAGENAME}}] URL: http://www.expasy.org | ||
==Discussion of {{PAGENAME}} on other websites== | ==Discussion of {{PAGENAME}} on other websites== | ||
Latest revision as of 00:11, 23 May 2010
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| Link/URL: | |
|---|---|
| What: |
Analysis of protein sequences and structures. |
| Who: |
Swiss Institute for Bioinformatics |
| Updates: |
Last Updated: Aug 2008 |
| Upcoming events: | |
| Web Services: |
|
| edit table |
About ExPASy proteomics server
The ExPASy proteomics server is the site people mean when they talk about SwissProt. In fact, the website is a portal to several proteome-related services provided by the Swiss Institute for Bioinformatics in collaboration, in many cases, with the European Bioinformatics Institute (EBI).
Content
Major database components of the ExPASy proteomics server include:
- UniProt KnowledgeBase (EcoliWiki Page) :a curated protein sequence database which strives to provide a high level of annotation (such as the description of the function of a protein, its domains structure, post-translational modifications, variants, etc.), a minimal level of redundancy and high level of integration with other databases.
- SWISS-MODEL (EcoliWiki Page):a database of annotated three-dimensional comparative protein structure models generated by the fully automated homology-modelling pipeline SWISS-MODEL.
- SWISS-2DPAGE :contains data on proteins identified on various 2-D PAGE and SDS-PAGE reference maps.
- ENZYME :a repository of information relative to the nomenclature of enzymes.
Expasy also provides many online software tools.
Using ExPASy proteomics server
Browsing
Searching
query by Swiss-Prot# (http://ca.expasy.org/cgi-bin/get-entries?AC=P25530)
EC# mapped to b# (http://us.expasy.org/cgi-bin/nicezyme.pl?4.2.1.12)
Usage examples
Add links to additional pages describing success stories here.
Technology
Web Services/API
Discussion
References
See Help:References for how to manage references in EcoliWiki.
External Links
ExPASy proteomics server URL: http://www.expasy.org