tmcA:Gene Product(s)

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

TmcA

Synonyms

predicted hydrolase[1], B2474[2][1], TmcA[2][1] , ECK2470, JW2459, ypfI, b2474

Product description

predicted hydrolase[2][3]

Function unknown; contains putative acetyltransferase domain[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

ycbB

PMID:16606699[5]

Experiment(s):EBI-1142979

Protein

yeaY

PMID:16606699[5]

Experiment(s):EBI-1142979

Protein

groL

PMID:16606699[5]

Experiment(s):EBI-1142979

Protein

ydfQ

PMID:16606699[5]

Experiment(s):EBI-1142979

Protein

dnaE

PMID:16606699[5]

Experiment(s):EBI-1142979

Protein

moaC

PMID:16606699[5]

Experiment(s):EBI-1142979

Protein

rpsE

PMID:16606699[5]

Experiment(s):EBI-1142979

Protein

mqo

PMID:16606699[5]

Experiment(s):EBI-1142979

Protein

groS

PMID:19402753[6]

LCMS(ID Probability):97.9 MALDI(Z-score):14.514901

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MAELTALHTL TAQMKREGIR RLLVLSGEEG WCFEHTLKLR DALPGDWLWI SPRPDAENHC
SPSALQTLLG REFRHAVFDA RHGFDAAAFA ALSGTLKAGS WLVLLLPVWE EWENQPDADS
LRWSDCPDPI ATPHFVQHLK RVLTADNEAI LWRQNQPFSL AHFTPRTDWY PATGAPQPEQ
QQLLKQLMTM PPGVAAVTAA RGRGKSALAG QLISRIAGRA IVTAPAKAST DVLAQFAGEK
FRFIAPDALL ASDEQADWLV VDEAAAIPAP LLHQLVSRFP RTLLTTTVQG YEGTGRGFLL
KFCARFPHLH RFELQQPIRW AQGCPLEKMV SEALVFDDEN FTHTPQGNIV ISAFEQTLWQ
SDPETPLKVY QLLSGAHYRT SPLDLRRMMD APGQHFLQAA GENEIAGALW LVDEGGLSQQ
LSQAVWAGFR RPRGNLVAQS LAAHGNNPLA ATLRGRRVSR IAVHPARQRE GTGRQLIAGA
LQYTQDLDYL SVSFGYTGEL WRFWQRCGFV LVRMGNHREA SSGCYTAMAL LPMSDAGKQL
AEREHYRLRR DAQALAQWNG ETLPVDPLND AVLSDDDWLE LAGFAFAHRP LLTSLGCLLR
LLQTSELALP ALRGRLQKNA SDAQLCTTLK LSGRKMLLVR QREEAAQALF ALNDVRTERL
RDRITQWQLF H
Length

671

Mol. Wt

74.893 kDa

pI

7.7 (calculated)

Extinction coefficient

117,910 - 119,035 (calc based on 9 Y, 19 W, and 9 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

196..337

PF05127 Putative ATPase (DUF699)

PMID:19920124[7]

Domain

63..153

PF08351 Domain of unknown function (DUF1726)

PMID:19920124[7]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=ypfI taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16130399

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:946053

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P76562

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:946053

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 5.3 5.4 5.5 5.6 5.7 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  6. ↑ Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
  7. ↑ 7.0 7.1 Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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