ycjU:Gene

From EcoliWiki
Jump to navigation Jump to search


Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Alleles and Phenotypes Genetic Resources Accessions Links References Suggestions

Nomenclature

<protect> See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

pgmB

Mnemonic
Synonyms

ycjU, ECK1312, b1317, JW1310[1][2]


See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Notes

Location(s) and DNA Sequence

See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

29.7 minutes

MG1655: 1378172..1378831
<gbrowseImage> name=NC_000913:1378172..1378831 source=MG1655 preset=GeneLocation </gbrowseImage>

W3110

W3110: 1381862..1382521
<gbrowseImage> name= NC_007779:1381862..1382521 source=W3110 preset=GeneLocation </gbrowseImage>



Notes

Sequence Features

See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes

See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Notes

Alleles and Phenotypes

See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Notes

Genetic Interactions

[back to top]



Interactor Interaction Allele Score(s) Reference(s) Accessions Notes

Genetic Resources

See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference


See Help:Gene_resources for help entering information into the Genetic Resources table.

Notes

Accessions in Other Databases

See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:G6655

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3677

Escherichia coli str. K-12 substr. MG1655

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b1317

ECOL199310CYC (EcoliWiki Page)

ECOL199310CYC:C1789

EcoGene

EcoGene:EG13918

Escherichia coli str. K-12 substr. MG1655

ECOO157CYC (EcoliWiki Page)

ECOO157CYC:YCJU

RegulonDB

RegulonDB:ECK120003250

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0004420

Escherichia coli str. K-12 substr. MG1655


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Notes

Links

References

See Help:References for how to manage references in EcoliWiki.

  1. ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7