ssrA:Gene Product(s)

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Gene

Gene Product(s)

Expression

Evolution

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Nomenclature

Function

Interactions

Localization

Sequence

Domains

Structure

Resources

Accessions

Links

References

Suggestions

Nomenclature

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Standard name	SsrA RNA
Synonyms	10Sa RNA SsrA (tmRNA), SsrA, tmRNA, 10Sa RNA, transfer-messenger RNA, SipB, B2621
Product description	tmRNA
EC number (for enzymes)
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Function

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Gene Ontology
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Qualifier	GO ID	GO term name	Reference	Evidence Code	with/from	Aspect	Notes	Status
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type	Partner	Notes	References	Evidence
Protein	SmpB
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Localization

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Compartment	Description	Evidence	Reference/Source	Notes
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Structure and Physical Properties

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Physical Properties

<protect> Type tmRNA Sequence GGGGCUGAUU CUGGAUUCGA CGGGAUUUGC GAAACCCAAG GUGCAUGCCG AGGGGCGGUU GGCCUCGUAA AAAGCCGCAA AAAAUAGUCG CAAACGACGA AAACUACGCU UUAGCAGCUU AAUAACCUGC UUAGAGCCCU CUCUCCCUAG CCUCCGCUCU UAGGACGGGG AUCAAGAGAG GUCAAACCCA AAAGAGAUCG CGUGGAAGCC CUGCCUGGGG UUGAAGCGUU AAAACUUAAU CAGGCUAGUU UGUUAGUGGC GUGUCCGUCC GCAGCUGGCA AGCGAAUGUA AAGACUGACU AAGCAUGUAG UACCGAGGAU GUAGGAAUUU CGGACGCGGG UUCAACUCCC GCCAGCUCCA CCA Mol. Wt edit table

tmRNA - Image courtesy of RFam

Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki. Type Residues Description Notes References edit table

<motif_map/>

Structure See Help:Product_structure for help entering or editing information in this section of EcoliWiki. Structures <beststructure> gene=ssrA taxon=562,83333 </beststructure> Models View models at: PSI-PRED Genomes TO Protein (GTOP) edit table

</protect> Structure figures Notes Gene Product Resources [back to top] See Help:Product_resources for help with entering or editing information in this section of EcoliWiki. Resource type Source Notes/Reference edit table Notes Accessions in Other Databases [back to top] See Help:Gene_accessions for help with entering information into the Gene Accessions table. Database Accession Notes EcoCyc EcoCyc:EG30100 Escherichia coli str. K-12 substr. MG1655 EcoGene EcoGene:EG30100 Escherichia coli str. K-12 substr. MG1655 RegulonDB RegulonDB:ECK120002542 Escherichia coli str. K-12 substr. MG1655 EchoBASE EchoBASE:EB4263 Escherichia coli str. K-12 substr. MG1655 ASAP ASAP:ABE-0008624 Escherichia coli str. K-12 substr. MG1655 edit table Notes Links [back to top] Name URL Comments edit table References [back to top] See Help:References for how to manage references in EcoliWiki. Categories [back to top]