yiaR:Gene Product(s)

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YiaR

Synonyms

predicted L-xylulose 5-phosphate 3-epimerase[1], B3582[2][1], YiaR[2][1], YiaR[2][1] , ECK3571, JW5650, sgbU, b3582

Product description

predicted L-xylulose 5-phosphate 3-epimerase[2][3]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0016853

isomerase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0413

F

Seeded from EcoCyc (v14.0)

complete

GO:0016861

intramolecular oxidoreductase activity, interconverting aldoses and ketoses

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004560

F

Seeded from EcoCyc (v14.0)

complete

GO:0034015

L-ribulose-5-phosphate 3-epimerase activity

GOA:spec
GO_REF:0000003

IEA: Inferred from Electronic Annotation

EC:5.1.3.22

F

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MRKSTLSGEV RVRNHQLGIY EKALAKDLSW PERLVLAKSC GFDFVEMSVD ETDERLSRLD
WSAAQRTSLV AAMIETGVGI PSMCLSAHRR FPFGSRDEAV RERAREIMSK AIRLARDLGI
RTIQLAGYDV YYEDHDEGTR QRFAEGLAWA VEQAAASQVM LAVEIMDTAF MNSISKWKKW
DEMLASPWFT VYPDVGNLSA WGNDVPAELK LGIDRIAAIH LKDTQPVTGQ SPGQFRDVPF
GEGCVDFVGI FKTLHKLNYR GSFLIEMWTE KAKEPVLEII QARRWIEARM QEAGFIC
Length

297

Mol. Wt

33.668 kDa

pI

5.7 (calculated)

Extinction coefficient

58,440 - 58,940 (calc based on 6 Y, 9 W, and 4 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

23..234

PF01261 Xylose isomerase-like TIM barrel

PMID:19920124[4]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=sgbU taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:90111618

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:948100

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0011700

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P37679

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG12286

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12286

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:948100

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002167

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2194

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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