efeU:Gene
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Location(s) and DNA Sequence | Sequence Features | Alleles and Phenotypes | Genetic Interactions | Genetic Resources | Accessions | Links | References | Suggestions |
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Nomenclature
See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.
| Standard name |
efeU |
|---|---|
| Mnemonic | |
| Synonyms |
Note that this is a pseudogene in K-12 strains, ECK1007, JW1002, JW5141, ycdN, b4490 |
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Notes
Location(s) and DNA Sequence
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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.
| Strain | Map location | Genome coordinates | Genome browsers | Sequence links |
|---|---|---|---|---|
|
MG1655 |
23.29 minutes |
MG1655: 1080579..1080689 |
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W3110 |
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W3110: 1081778..1081888 |
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MG1655 |
23.29 minutes |
MG1655: 1080677..1081408 |
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W3110 |
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W3110: 1081876..1082607 |
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MG1655 |
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MG1655: 1080570..1081408 |
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W3110 |
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W3110: 1081778..1082607 |
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| edit table |
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Notes
efeU_1: >gnl|ECOLI|G6525 efeU_1 1081356..1081466 Escherichia coli K-12 substr. MG1655
atgTTTGTTC CGTTTCTCAT TATGTTGCGC GAAGGACTTG AAGCCGCGCT GATTGTCAGT TTGATTGCCA GCTATCTTAA GCGTACCCAG CGAGGCCGAT GGATTGTGtg a
efeU_2: >gnl|ECOLI|G0-10495 efeU_2 1081454..1082185 Escherichia coli K-12 substr. MG1655
atgGATTGTG TGATGTGGAT TGGCGTGTTG CTTGCCGCTG CGTTGTGCCT GGGCTTGGGT ATCTTCATTA ACGAAACCAC CGGCGAATTT CCGCAAAAAG AACAGGAACT GTTTGAAGGT ATCGTGGCGG TGATCGCCGT GGTGATCCTT ACCTGGATGG TTTTCTGGAT GCGCAAAGTG TCGCGCAACG TCAAAGTGCA ACTGGAACAG GCAGTCGATA GCGCATTGCA GCGTGGAAAT CATCATGGCT GGGCGCTGGT GATGATGGTC TTTTTTGCCG TTGCAAGGGA AGGGCTGGAG TCGGTCTTTT TCCTGCTGGC GGCATTTCAA CAAGATGTCG GGATCTGGCC GCCGCTGGGT GCAATGCTCG GTCTTGCTAC TGCCGTGGTG CTAGGCTTCC TGCTCTACTG GGGCGGTATT CGCCTCAATC TTGGTGCATT TTTTAAATGG ACCAGCCTGT TTATTCTCTT CGTCGCCGCA GGGCTGGCAG CTGGTGCCAT TCGCGCATTT CATGAAGCCG GATTGTGGAA CCACTTTCAG GAAATCGCCT TCGATATGAG TGCGGTGCTC TCAACTCACT CGCTGTTTGG CACGCTGATG GAAGGGATTT TTGGCTATCA GGAAGCGCCG AGCGTCAGCG AAGTCGCCGT CTGGTTTATT TATCTCATCC CGGCGCTGGT GGCATTTGCT CTGCCACCAC GCGCAGGGGC GACAGCGTCT CGCTCCGCGt aa
Sequence Features
See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.
| Feature Type | Strain | Genomic Location | Evidence | Reference | Notes |
|---|---|---|---|---|---|
| edit table |
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Notes
Alleles and Phenotypes
See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.
| Allele | Nt change(s) | AA change(s) | Phenotype: Type | Phenotype: Description | Reference | Availability | Comments |
|---|---|---|---|---|---|---|---|
| edit table |
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Notes
Genetic Interactions
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| Interactor | Interaction | Allele | Score(s) | Reference(s) | Accessions | Notes |
|---|---|---|---|---|---|---|
| edit table |
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Notes
Genetic Resources
See Help:Gene_resources for help entering information into the Genetic Resources table.
| Resource | Resource Type | Source | Notes/Reference |
|---|---|---|---|
|
Plasmid clone |
Status: Primer 1: Primer 2: | ||
|
Kohara Phage |
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Kohara Phage |
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| edit table |
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Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
| edit table |
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Notes
Links
| Name | URL | Comments |
|---|---|---|
| edit table |
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References
See Help:References for how to manage references in EcoliWiki.
- ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
- ↑ 2.0 2.1 Kohara, Y et al. (1987) The physical map of the whole E. coli chromosome: application of a new strategy for rapid analysis and sorting of a large genomic library. Cell 50 495-508 PubMed
