Cis Element:Plasmid cer
Cis element summary table
<protect>
| Standard Name |
cer |
|---|---|
| Synonyms | |
| Function |
Plasmid Recombination Site |
| Location | |
| SO terms |
|
| edit table |
</protect>
Notes
Location and Sequence
<protect>
See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.
| Strain | Map location | Genome coordinates | Genome browsers | Sequence links |
|---|---|---|---|---|
|
ColE1 |
||||
| edit table |
</protect>
Notes
Interactions
<protect>
See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.
| Partner Type | Partner | Notes | References | Evidence |
|---|---|---|---|---|
|
Protein |
XerC |
|||
|
Protein |
XerD |
|||
|
Protein |
ArgR |
|||
|
Protein |
PepA |
|||
|
Protein |
ArgR |
may be indirect |
in vivo recombination assays | |
|
Protein |
PepA |
may be indirect |
in vivo recombination assays | |
| edit table |
</protect>
Notes
- Xer-mediated recombination generates Holliday junction-containing DNA molecules[4].
- The product of recombination at cer is a right-handed antiparallel catenane[5].
Mutant alleles and phenotypes
<protect>
| Allele | Nt change(s) | Phenotype: Type | Phenotype: Description | Reference | Availability | Comments |
|---|---|---|---|---|---|---|
| edit table |
</protect>
Notes
Genetic Resources
<protect>
See Help:Gene_resources for help entering information into the Genetic Resources table.
| Resource | Resource Type | Source | Notes/Reference |
|---|---|---|---|
|
pSD115 |
Plasmid Clone |
Reporter plasmid containing two directly repeated cer sites |
|
| edit table |
</protect>
Notes
Accessions
<protect>
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
EcoCyc: |
Escherichia coli str. K-12 substr. MG1655 | |
|
EcoGene: |
Escherichia coli str. K-12 substr. MG1655 | |
|
RegulonDB: |
Escherichia coli str. K-12 substr. MG1655 | |
|
EchoBASE: |
Escherichia coli str. K-12 substr. MG1655 | |
|
ASAP: |
Escherichia coli str. K-12 substr. MG1655 | |
| edit table |
</protect>
Notes
References
See Help:References for how to manage references in EcoliWiki.
- ↑ Blakely, G et al. (1991) Escherichia coli XerC recombinase is required for chromosomal segregation at cell division. New Biol. 3 789-98 PubMed
- ↑ Cornet, F et al. (1994) Plasmid pSC101 harbors a recombination site, psi, which is able to resolve plasmid multimers and to substitute for the analogous chromosomal Escherichia coli site dif. J. Bacteriol. 176 3188-95 PubMed
- ↑ 3.0 3.1 3.2 3.3 Colloms, SD et al. (1996) Xer-mediated site-specific recombination in vitro. EMBO J. 15 1172-81 PubMed
- ↑ 4.0 4.1 4.2 4.3 McCulloch, R et al. (1994) Xer-mediated site-specific recombination at cer generates Holliday junctions in vivo. EMBO J. 13 1844-55 PubMed
- ↑ Colloms, SD et al. (1997) Topological selectivity in Xer site-specific recombination. Cell 88 855-64 PubMed
===Categories===
