5S rRNA:Gene Product(s)

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Gene

Gene Product(s)

Expression

Evolution

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Nomenclature

Function

Interactions

Localization

Sequence

Domains

Structure

Resources

Accessions

Links

References

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Nomenclature

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Standard name	5S rRNA
Synonyms	5S rRNA (rrfH), 5S rRNA (rrfG), 5S rRNA (rrfF), 5S rRNA (rrfD), 5S rRNA (rrfC), 5S rRNA (rrfA), 5S rRNA (rrfB), 5S rRNA (rrfE), rrfH, rrnH
Product description	5S ribosomal RNA
EC number (for enzymes)
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Function

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Gene Ontology See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier	GO ID	GO term name	Reference	Evidence Code	with/from	Aspect	Notes	Status
	GO:0016072	rRNA metabolic process				P	Seeded from EcoCyc 11.1.	Missing: evidence, reference
	GO:0009281	cytosolic ribosome (sensu Bacteria)				C	Seeded from EcoCyc 11.1.	Missing: evidence, reference
	GO:0006412	translation				P	Seeded from EcoCyc 11.1.	Missing: evidence, reference
	GO:0005737	cytoplasm				C	Seeded from EcoCyc 11.1.	Missing: evidence, reference
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Interactions

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Partner Type	Partner	Notes	References	Evidence
Protein	Subunits of 50S ribosomal subunit	could be indirect
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Localization

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Compartment	Description	Evidence	Reference/Source	Notes
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Structure and Physical Properties

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Physical Properties

<protect> Type rRNA Sequence UGCCUGGCGG CCGUAGCGCG GUGGUCCCAC CUGACCCCAU GCCGAACUCA GAAGUGAAAC GCCGUAGCGC CGAUGGUAGU GUGGGGUCUC CCCAUGCGAG AGUAGGGAAC UGCCAGGCAU Mol. Wt 38994.32 edit table

5S rRNA - Image courtesy of RFam

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Domains/Motifs/Modification Sites

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Structure See Help:Product_structure for help entering or editing information in this section of EcoliWiki. Structures <beststructure> gene=5S_rRNA taxon=562,83333 </beststructure> Models View models at: EcoliPredict ModBase PSI-PRED Protein Quaternary Structure (PQS) Genomes TO Protein (GTOP) edit table See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

</protect> Structure figures Notes Gene Product Resources [back to top] See Help:Product_resources for help with entering or editing information in this section of EcoliWiki. Resource type Source Notes/Reference edit table See Help:Product_resources for help with entering or editing information in this section of EcoliWiki. Notes Accessions in Other Databases [back to top] See Help:Gene_accessions for help with entering information into the Gene Accessions table. Database Accession Notes EcoGene EcoGene: Escherichia coli str. K-12 substr. MG1655 RegulonDB RegulonDB: Escherichia coli str. K-12 substr. MG1655 EchoBASE EchoBASE: Escherichia coli str. K-12 substr. MG1655 ASAP ASAP: Escherichia coli str. K-12 substr. MG1655 edit table See Help:Product_accessions for help entering or editing information in this section of EcoliWiki. Notes Links [back to top] Name URL Comments edit table See Help:Links_table for how to enter or edit information in this section of EcoliWiki. References [back to top] See Help:References for how to manage references in EcoliWiki. Categories [back to top]