Cis Element:Phage lambda attR

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Cis element summary table

Standard Name

lambda attR

Synonyms
Function

Right prophage att site; DNA sequence at right end of integrated prophage lambda genome that mediate synapsis and strand exchange along with attL site (left end of lambda genome).

Location

In the linear sequence of the lambda genome (NC_001416), the sequence position is: nt 27,571 - 27,742

The position in the E. coli genome:

SO terms


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Notes

In the free phage, the att site is referred to as attP (phage attachment site) while the corresponding site in a host genome is called attB (bacterial attachment site). After integration occurs to create a prophage, these sites are then known as attL (left end of prophage) and attR (right end of prophage). Reviewed in Lambda II.[1]

Location and Sequence

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Strain Map location Genome coordinates Genome browsers Sequence links

Phage lambda (NC_001416)

NC_001416: 27571..27742
gbrowse_img.php?coord=27521..27792&genome=bacteriophage_lambda&name=NC_001416&trackset=0&width=300&.png

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Notes

The sequence of attR is: 

1 GCGCTAATGC TCTGTTACAG GTCACTAATA CCATCTAAGT AGTTGATTCA TAGTGACTGC ATATGTTGTG <br\>  TTTTACAGTA TTATGTAGTC TGTTTTTTAT GCAAAATCTA ATTTAATATA TTGATATTTA TATCATTTTA <br\>  CGTTTCTCGT TCAGCTTTTT TATACTAACT TG 172

Interactions

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Partner Type Partner Notes References Evidence
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Notes

Mutant alleles and phenotypes

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Allele Nt change(s) Phenotype: Type Phenotype: Description Reference Availability Comments
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Notes

Genetic Resources

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Resource Resource Type Source Notes/Reference
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Notes

Accessions

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Database Accession Notes
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Notes

References

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  1. ↑ Edited by Roger W. Hendrix, Jeffrey W. Roberts, Franklin W. Stahl and Robert A. Weisberg (1983) Lambda II (Cold Spring Harbor Laboratory, Cold Spring Harbor, NY)

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