Features at different databases

Query types

**Query inputs and outputs**
Input	Output
gene name (e.g. lacY) sequence	description function,localization,process (GO definitions )
gene name	pathway
pathway	gene name
gene name (genbank namespace) more generally gene name (namespace1)	gene name (ecogene namespace) more generally gene name (namespace2) Some namespaces: genbank pdb ecogene

**Query inputs and outputs**
Input	Output
DNA location	Gene name
gene function (GO term) same for process and other GO branches	gene name
gene name	experimental data gene expression protein interaction
sequence	related sequence (BLAST)
gene name (species 1)	gene name( species 2)
gene name	*mutations sequence difference phenotype

**Query inputs and outputs**
Input	Output
strain ID	*gene name mutation source
metabolic process	*regulatory circuits transcription factors/sites