deaD:Quickview: Difference between revisions

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!align=left {{table_heading_style}} |Standard Name
!align=left |Standard Name
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''deaD''  
''deaD''  
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!align=left {{table_heading_style}} |Gene Synonym(s)
!align=left |Gene Synonym(s)
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''ECK3150, b3162, JW5531, mssB, rhlD''<ref name='LIB:Riley_2006'/>
''ECK3150, b3162, JW5531, mssB, rhlD''<ref name='LIB:Riley_2006'/>
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!align=left {{table_heading_style}} |Product Desc.
!align=left |Product Desc.
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CsdA, DEAD-box RNA helicase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
CsdA, DEAD-box RNA helicase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
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Translation factor W2, putative RNA helix-destabilizer; facilitates translation of mRNAs with 5' secondary structures; multicopy suppressor of rpsB(Ts) mutations<ref name='LIB:EcoGene'/>
Translation factor W2, putative RNA helix-destabilizer; facilitates translation of mRNAs with 5' secondary structures; multicopy suppressor of rpsB(Ts) mutations<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
!align=left |Product Synonyms(s)
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ATP-dependent RNA helicase<ref name='LIB:Riley_2006'/>, B3162<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, RhlD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, MssB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DeaD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
ATP-dependent RNA helicase<ref name='LIB:Riley_2006'/>, B3162<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, RhlD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, MssB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DeaD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!align=left {{table_heading_style}} |Knock-Out Phenotype
!align=left |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
!align=left |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:deaD|deaD]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:deaD|deaD]]<ref name='LIB:EcoCyc10.6'/>  
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!align=left {{table_heading_style}} |Regulation/Activity
!align=left |Regulation/Activity
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Revision as of 00:35, 9 January 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions

See Help:Quickview for help with entering information in the Quickview table.

Standard Name

deaD

Gene Synonym(s)

ECK3150, b3162, JW5531, mssB, rhlD[1]

Product Desc.

CsdA, DEAD-box RNA helicase[2][3]

Translation factor W2, putative RNA helix-destabilizer; facilitates translation of mRNAs with 5' secondary structures; multicopy suppressor of rpsB(Ts) mutations[4]

Product Synonyms(s)

ATP-dependent RNA helicase[1], B3162[2][1], RhlD[2][1], MssB[2][1], DeaD[2][1]

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): deaD[2]

Regulation/Activity


edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

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Mechanism of DeaD 50S biogenesis differs from that for SrmB 50S biogenesis. stabilizes exposed mRNA, possibly by protecting or destabilizing secondary structure of RNase E sites. Cold shock-inducible; acid-inducible.[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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