deaD:Evolution

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Homologs Families Links References Suggestions

Homologs in Other Organisms

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Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000020417 (score: 1.000; bootstrap: 57%)
  • ENSANGP00000014802 (score: 0.518)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000021327 (score: 1.000; bootstrap: 59%)
  • ENSBTAP00000019596 (score: 0.516)
  • ENSBTAP00000000144 (score: 0.507)
  • ENSBTAP00000018962 (score: 0.416)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00031575 (score: 1.000; bootstrap: 50%)
  • WBGene00026478 (score: 0.097)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00002083 (score: 1.000; bootstrap: 52%)
  • WBGene00022029 (score: 0.462)
  • WBGene00018007 (score: 0.462)
  • WBGene00018997 (score: 0.358)
  • WBGene00000479 (score: 0.060)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000020343 (score: 1.000; bootstrap: 54%)
  • ENSCAFP00000020312 (score: 0.431)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000016005 (score: 1.000; bootstrap: 49%)
  • ENSCINP00000005836 (score: 0.379)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-040426-915 (score: 1.000; bootstrap: 53%)
  • ZDB-CDNA-040425-1843 (score: 1.000; bootstrap: 51%)
  • ZDB-CDNA-040425-269 (score: 0.525)
  • ZDB-GENE-031030-2 (score: 0.525)
  • ZDB-CDNA-040425-270 (score: 0.514)
  • ZDB-GENE-040120-6 (score: 0.514)
  • ZDB-CDNA-040425-3749 (score: 0.265)
  • ZDB-GENE-040426-2802 (score: 0.265)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0191511 (score: 1.000; bootstrap: 57%)
  • DDB0191262 (score: 0.345)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0001942 (score: 1.000; bootstrap: 56%)
  • FBgn0037573 (score: 1.000; bootstrap: 59%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA20384-PA (score: 1.000; bootstrap: 69%)
  • GA21521-PA (score: 0.503)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000014119 (score: 1.000; bootstrap: 52%)
  • ENSGALP00000013887 (score: 0.385)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000277806 (score: 1.000; bootstrap: 53%)
  • ENSP00000277804 (score: 0.424)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000012539 (score: 1.000; bootstrap: 54%)
  • ENSMMUP00000009247 (score: 0.823)
  • ENSMMUP00000004942 (score: 0.511)
  • ENSMMUP00000017746 (score: 0.507)
  • ENSMMUP00000009900 (score: 0.301)
  • ENSMMUP00000026101 (score: 0.188)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000002662 (score: 1.000; bootstrap: 65%)
  • ENSMODP00000008799 (score: 0.509)
  • ENSMODP00000026607 (score: 0.507)

From Inparanoid:20070104

Mus musculus

  • MGI:1923731 (score: 1.000; bootstrap: 56%)
  • MGI:3644832 (score: 1.000; bootstrap: 55%)
  • MGI:3644226 (score: 0.952)
  • MGI:3646594 (score: 0.947)
  • MGI:106906 (score: 0.519)
  • MGI:95303 (score: 0.510)
  • MGI:3645437 (score: 0.457)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000004431 (score: 1.000; bootstrap: 59%)
  • ENSPTRP00000004429 (score: 0.423)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000002484 (score: 1.000; bootstrap: 62%)
  • ENSRNOP00000011096 (score: 1.000; bootstrap: 62%)
  • ENSRNOP00000043538 (score: 0.879)
  • ENSRNOP00000037170 (score: 0.565)
  • ENSRNOP00000004891 (score: 0.172)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YHR065C (score: 1.000; bootstrap: 53%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPAC8238c (score: 1.000; bootstrap: 56%)
  • SPBC5436c (score: 0.062)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00004149001 (score: 1.000; bootstrap: 57%)
  • GSTENP00013198001 (score: 0.398)
  • GSTENP00014223001 (score: 0.395)
  • GSTENP00014966001 (score: 0.321)
  • GSTENP00031682001 (score: 0.305)
  • GSTENP00007510001 (score: 0.135)

From Inparanoid:20070104

Shigella flexneri

DEAD

From SHIGELLACYC

E. coli O157

DEAD

From ECOO157CYC

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00271 Helicase conserved C-terminal domain

Pfam (EcoliWiki Page)

PF00270 DEAD/DEAH box helicase

Pfam (EcoliWiki Page)

PF03880 DbpA RNA binding domain

Superfamily (EcoliWiki Page)

SUPERFAMILY:52540

Superfamily (EcoliWiki Page)

SUPERFAMILY:52540

Panther (EcoliWiki Page)

PTHR24031:SF163

Pfam (EcoliWiki Page)

PF12343 Cold shock protein DEAD box A

EcoCyc

EcoCyc:EG10215

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10215

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000209

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0211

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0010392

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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Categories

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