Cis Element:Phage lambda attL: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older editNewer edit →
Fixing references section.
Update TableEdit tables.
Line 8: Line 8:
*  
*  
****************************************************************************************** -->
****************************************************************************************** -->
{|border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  
{| id="H4a42497322f52" class=" tableEdit Cis_element_summary_table"


|-
|-
!align=left {{table_heading_style}} |Standard Name
!align=left |Standard Name
||
||
''lambda attL''
''lambda attL''
|-
|-
!align=left {{table_heading_style}} |Synonyms
!align=left |Synonyms
||
||


|-
|-
!align=left {{table_heading_style}} |Function
!align=left |Function
||
||
Left prophage ''att'' site; DNA sequence at left end of integrated prophage lambda genome that mediate synapsis and strand exchange along with ''attR'' site (right end of lambda genome).
Left prophage ''att'' site; DNA sequence at left end of integrated prophage lambda genome that mediate synapsis and strand exchange along with ''attR'' site (right end of lambda genome).
|-
|-
!align=left {{table_heading_style}} |Location
!align=left |Location
||
||
In the <b>linear</b> sequence of the lambda genome (NC_001416), the sequence position is: nt 27,724 - 27,781  
In the <b>linear</b> sequence of the lambda genome (NC_001416), the sequence position is: nt 27,724 - 27,781  
Line 29: Line 29:
The position in the ''E. coli'' genome:   
The position in the ''E. coli'' genome:   
|-
|-
!align=left {{table_heading_style}} |SO terms
!align=left |SO terms
||
||




|-class='sortbottom'
|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.164842.H4a42497322f52&page=164842&pagename={{FULLPAGENAMEE}}&type=1&template=Cis_element_summary_table edit table] ||
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.164842.H4a42497322f52&page=164842&pagename={{FULLPAGENAMEE}}&type=1&template=Cis_element_summary_table edit table]</span> ||
|}
|}
<!--box uid=63ce1649aab8b3180235b0af7618f667.164842.H4a42497322f52--></protect>
<!--box uid=63ce1649aab8b3180235b0af7618f667.164842.H4a42497322f52--></protect>
Line 49: Line 49:
*  
*  
****************************************************************************************** -->{{Gene_location_help}}
****************************************************************************************** -->{{Gene_location_help}}
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"   
{|   id="K4a4249738c6f3" class=" tableEdit Gene_location_table"   
|- {{table_heading_style}}
|-
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
|-  
|-  
Line 65: Line 65:
{{GBrowseFastaLink|bacteriophage_lambda|NC_001416|27724|27781|FASTA Dump}}  
{{GBrowseFastaLink|bacteriophage_lambda|NC_001416|27724|27781|FASTA Dump}}  


|-class='sortbottom'
|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.164842.K4a4249738c6f3&page=164842&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_location_table edit table] || || || ||
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.164842.K4a4249738c6f3&page=164842&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_location_table edit table]</span> || || || ||
|}
|}
<!--box uid=63ce1649aab8b3180235b0af7618f667.164842.K4a4249738c6f3--></protect>
<!--box uid=63ce1649aab8b3180235b0af7618f667.164842.K4a4249738c6f3--></protect>
Line 83: Line 83:
*  
*  
****************************************************************************************** -->{{Product_interactions_help}}
****************************************************************************************** -->{{Product_interactions_help}}
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"   
{|   id="G4a4249738fb98" class=" tableEdit Product_interactions_table"   
|- {{table heading style}}
|-
!|Partner Type!!Partner!!Notes!!References!!Evidence
!|Partner Type!!Partner!!Notes!!References!!Evidence


|-class='sortbottom'
|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.164842.G4a4249738fb98&page=164842&pagename={{FULLPAGENAMEE}}&type=0&template=Product_interactions_table edit table] || || || ||
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.164842.G4a4249738fb98&page=164842&pagename={{FULLPAGENAMEE}}&type=0&template=Product_interactions_table edit table]</span> || || || ||
|}
|}
<!--box uid=63ce1649aab8b3180235b0af7618f667.164842.G4a4249738fb98--></protect>
<!--box uid=63ce1649aab8b3180235b0af7618f667.164842.G4a4249738fb98--></protect>
Line 103: Line 103:
*  
*  
****************************************************************************************** -->
****************************************************************************************** -->
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"   
{|   id="P4a424973917fb" class=" tableEdit Cis_Element_allele_table"   
|- {{table_heading_style}}
|-
!|Allele!!Nt change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
!|Allele!!Nt change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments


|-class='sortbottom'
|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.164842.P4a424973917fb&page=164842&pagename={{FULLPAGENAMEE}}&type=0&template=Cis_Element_allele_table edit table] || || || || || ||
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.164842.P4a424973917fb&page=164842&pagename={{FULLPAGENAMEE}}&type=0&template=Cis_Element_allele_table edit table]</span> || || || || || ||
|}
|}
<!--box uid=63ce1649aab8b3180235b0af7618f667.164842.P4a424973917fb--></protect>
<!--box uid=63ce1649aab8b3180235b0af7618f667.164842.P4a424973917fb--></protect>
Line 123: Line 123:
*  
*  
****************************************************************************************** -->{{Gene_resources_help}}
****************************************************************************************** -->{{Gene_resources_help}}
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"   
{|   id="B4a42497392bb3" class=" tableEdit Gene_resource_table"   
|- {{table_heading_style}}
|-
!|Resource!!Resource Type!!Source!!Notes/Reference
!|Resource!!Resource Type!!Source!!Notes/Reference


|-class='sortbottom'
|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.164842.B4a42497392bb3&page=164842&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_resource_table edit table] || || ||
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.164842.B4a42497392bb3&page=164842&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_resource_table edit table]</span> || || ||
|}
|}
<!--box uid=63ce1649aab8b3180235b0af7618f667.164842.B4a42497392bb3--></protect>  
<!--box uid=63ce1649aab8b3180235b0af7618f667.164842.B4a42497392bb3--></protect>  
Line 142: Line 142:
*  
*  
****************************************************************************************** -->{{Gene_accessions_help}}
****************************************************************************************** -->{{Gene_accessions_help}}
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"   
{|   id="B4a42497396a38" class=" tableEdit Gene_accessions_table"   
|- {{table_heading_style}}
|-
!|Database!!Accession!!Notes
!|Database!!Accession!!Notes


|-class='sortbottom'
|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.164842.B4a42497396a38&page=164842&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.164842.B4a42497396a38&page=164842&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table]</span> || ||
|}
|}
<!--box uid=63ce1649aab8b3180235b0af7618f667.164842.B4a42497396a38--></protect>
<!--box uid=63ce1649aab8b3180235b0af7618f667.164842.B4a42497396a38--></protect>

Revision as of 00:21, 9 January 2010

Cis element summary table

Standard Name

lambda attL

Synonyms
Function

Left prophage att site; DNA sequence at left end of integrated prophage lambda genome that mediate synapsis and strand exchange along with attR site (right end of lambda genome).

Location

In the linear sequence of the lambda genome (NC_001416), the sequence position is: nt 27,724 - 27,781

The position in the E. coli genome:

SO terms


edit table

Notes

In the free phage, the att site is referred to as attP (phage attachment site) while the corresponding site in a host genome is called attB (bacterial attachment site). After integration occurs to create a prophage, these sites are then known as attL (left end of prophage) and attR (right end of prophage). Reviewed in Lambda II.[1]

Location and Sequence

[back to top]


See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

Phage Lambda (NC_001416)

NC_001416: 27724..27781
gbrowse_img.php?coord=27674..27831&genome=bacteriophage_lambda&name=NC_001416&trackset=0&width=300&.png

edit table


Notes

The sequence of attL is: 

1 CCTGCTTTTT TATACTAAGT TGGCATTATA AAAAAGCATT GCTTATCAAT TTGTTGCAAC GAACAGGTCA <br\>  CTATCAGTCA AAATAAAATC ATTATTTGAT T 101

Interactions

[back to top]


See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
edit table


Notes

Mutant alleles and phenotypes

[back to top]


Allele Nt change(s) Phenotype: Type Phenotype: Description Reference Availability Comments
edit table


Notes

Genetic Resources

[back to top]


See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference
edit table

Notes

Accessions

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes
edit table


Notes

References

[back to top]


See Help:References for how to manage references in EcoliWiki.

  1. ↑ Edited by Roger W. Hendrix, Jeffrey W. Roberts, Franklin W. Stahl and Robert A. Weisberg (1983) Lambda II (Cold Spring Harbor Laboratory, Cold Spring Harbor, NY)

Categories

Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=Cis_Element:Phage_lambda_attL&oldid=974884"