ExPASy proteomics server: Difference between revisions
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Revision as of 22:26, 4 June 2009
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| Link/URL: | |
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| What: |
Analysis of protein sequences and structures. |
| Who: |
Swiss Institute for Bioinformatics |
| Updates: |
Last Updated: Aug 2008 |
| Upcoming events: | |
| Web Services: |
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| edit table |
About ExPASy proteomics server
The ExPASy proteomics server is the site people mean when they talk about SwissProt. In fact, the website is a portal to several proteome-related services provided by the Swiss Institute for Bioinformatics in collaboration, in many cases, with the European Bioinformatics Institute (EBI).
Content
Major database components of the ExPASy proteomics server include:
- UniProt KnowledgeBase (EcoliWiki Page) :a curated protein sequence database which strives to provide a high level of annotation (such as the description of the function of a protein, its domains structure, post-translational modifications, variants, etc.), a minimal level of redundancy and high level of integration with other databases.
- SWISS-MODEL (EcoliWiki Page):a database of annotated three-dimensional comparative protein structure models generated by the fully automated homology-modelling pipeline SWISS-MODEL.
- SWISS-2DPAGE :contains data on proteins identified on various 2-D PAGE and SDS-PAGE reference maps.
- ENZYME :a repository of information relative to the nomenclature of enzymes.
Expasy also provides many online software tools.
Using ExPASy proteomics server
Browsing
Searching
query by Swiss-Prot# (http://ca.expasy.org/cgi-bin/get-entries?AC=P25530)
EC# mapped to b# (http://us.expasy.org/cgi-bin/nicezyme.pl?4.2.1.12)
Usage examples
Add links to additional pages describing success stories here.
Technology
Web Services/API
Discussion
References
External Links
ExPASy proteomics server URL: http://www.expasy.org