FAMSBASE: Difference between revisions
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[http://daisy.nagahama-i-bio.ac.jp/Famsbase/ FAMSBASE] | |||
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Protein structure models by homology modeling | |||
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Hideaki Umeyama, Kitasato University | |||
Mitiko Go, Nagahama Institute of Bio-Science and Technology | |||
Japan | |||
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!align=left {{table heading style}} |Updates: | !align=left {{table heading style}} |Updates: | ||
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Revision as of 20:59, 2 June 2009
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| Link/URL: | |
|---|---|
| What: |
Protein structure models by homology modeling |
| Who: |
Hideaki Umeyama, Kitasato University Mitiko Go, Nagahama Institute of Bio-Science and Technology Japan |
| Updates: | |
| Upcoming events: | |
| Web Services: |
|
| edit table |
About FAMSBASE
Content
FAMSBASE[1] provides automated homology modeling of protein structures.
Using FAMSBASE
FAMSBASE requires a login for full access, but an anonymous public login says that it allows searching for ORFs with 3D models.
Browsing
Following the public login link, many queries take you to a page that asks you to create an account. However, without creating an account, you can view a list of Proteins with FAMSBASE models. This can be restricted to a particular genome by clicking a checkbox for the desired genome. The output gives psiblast scores and links to other FAMSBASE analysis pages (which need a login) and to GTOP. The ones I tested did not link properly to GTOP.
Searching
Usage examples
Add links to additional pages describing success stories here.
Technology
Web Services/API
Discussion
References
External Links
FAMSBASE URL: http://daisy.nagahama-i-bio.ac.jp/Famsbase/