NCBI

You can help EcoliWiki by editing the content of this page. For information about becoming a registered user and obtaining editing privileges, see Help:Accounts.

Link/URL:	http://www.ncbi.nlm.nih.gov/
What:	National Center for Biotechnology Information
Who:	National Library of Medicine, National Institutes of Health
Updates:
Upcoming events:
Web Services:	E-Utils
edit table

About NCBI

Add general information here NCBI is...

Using NCBI

Searching

NCBI Entrez Protein: query by protein_id (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&cmd=Retrieve&list_uids=1788157&dopt=GenPept)
NCBI PubMed: query by gene name OR b# AND Escherichia coli (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Search&db=PubMed&term=%28edd+OR+b1851%29+AND+escherichia+coli&tool=fuzzy&ot=%28edd+OR+b1851%29+AND+%27Escherichia+coli%27%29)
NCBI Entrez Gene: query by gene_id (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&cmd=retrieve&dopt=graphics&list_uids=946362)
NCBI Entrez Genome: query by gene name (http://www.ncbi.nlm.nih.gov/genomes/altvik.cgi?gi=115&db=g&gene=edd)

Usage examples

Add links to additional pages describing success stories here.

Technology

Web Services/API

NCBI E-Utils web services can be used with Entrez databases

Entrez Database	Primary ID	E-Utility Database Name	Example query
3D Domains	3D SDI	domains
Domains	PSSM-ID	cdd
Genome	Genome ID	genome
Nucleotide	GI number	nucleotide
OMIM	MIM number	omim
PopSet	Popset ID	popset
Protein	GI number	protein
ProbeSet	GEO ID	geo
PubMed	PMID	pubmed
Structure	MMDB ID	structure
SNP	SNP ID	snp
Taxonomy	TAXID	taxonomy
UniGene	UniGene ID	unigene
UniSTS	UniSTS ID	unists
edit table

External Links

NCBI