msbA:Evolution: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older editNewer edit →
Edited by wikibot
imported>Wikientrybot
Move help links into the <above> tag inside templates.
Line 25: Line 25:
<!--
<!--
******************************************************************************************
******************************************************************************************
*
*  
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
*
*  
****************************************************************************************** -->
****************************************************************************************** -->{{Evolution_homologs_table_help}}
{|class = 'sortable' {{Prettytable}} id='208489'
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" 
|- {{table heading style}}
|- {{table heading style}}
!Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
|-
|-  
|
|
''Anopheles gambiae''   
''Anopheles gambiae''   
Line 39: Line 39:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Apis mellifera''   
''Apis mellifera''   
Line 47: Line 47:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Arabidopsis thaliana''   
''Arabidopsis thaliana''   
Line 61: Line 61:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Bos taurus''   
''Bos taurus''   
Line 70: Line 70:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Caenorhabditis briggsae''   
''Caenorhabditis briggsae''   
Line 91: Line 91:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Caenorhabditis elegans''   
''Caenorhabditis elegans''   
Line 112: Line 112:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Canis familiaris''   
''Canis familiaris''   
Line 122: Line 122:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Ciona intestinalis''   
''Ciona intestinalis''   
Line 134: Line 134:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Danio rerio''   
''Danio rerio''   
Line 144: Line 144:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Dictyostelium discoideum''   
''Dictyostelium discoideum''   
Line 153: Line 153:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Drosophila melanogaster''   
''Drosophila melanogaster''   
Line 163: Line 163:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Drosophila pseudoobscura''   
''Drosophila pseudoobscura''   
Line 172: Line 172:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Gallus gallus''   
''Gallus gallus''   
Line 181: Line 181:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Homo sapiens''   
''Homo sapiens''   
Line 191: Line 191:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Macaca mulatta''   
''Macaca mulatta''   
Line 201: Line 201:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Monodelphis domestica''   
''Monodelphis domestica''   
Line 211: Line 211:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Mus musculus''   
''Mus musculus''   
Line 221: Line 221:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Oryza gramene''   
''Oryza gramene''   
Line 264: Line 264:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Pan troglodytes''   
''Pan troglodytes''   
Line 274: Line 274:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Rattus norvegicus''   
''Rattus norvegicus''   
Line 284: Line 284:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Saccharomyces cerevisiae''   
''Saccharomyces cerevisiae''   
Line 292: Line 292:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Schizosaccharomyces pombe''   
''Schizosaccharomyces pombe''   
Line 299: Line 299:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Takifugu rubripes''   
''Takifugu rubripes''   
Line 309: Line 309:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Tetraodon nigroviridis''   
''Tetraodon nigroviridis''   
Line 320: Line 320:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Xenopus tropicalis''   
''Xenopus tropicalis''   
Line 327: Line 327:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Shigella flexneri''   
''Shigella flexneri''   
Line 334: Line 334:
|
|
From SHIGELLACYC  
From SHIGELLACYC  
|-
|-  
|
|
''E. coli'' O157  
''E. coli'' O157  
Line 341: Line 341:
|
|
From ECOO157CYC  
From ECOO157CYC  
|-class='sortbottom'
|-class='sortbottom'
|[{{SERVER}}{{SCRIPTPATH}}/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.45797.K46abb250f0c81&page=45797&pagename={{FULLPAGENAMEE}} edit table] || ||
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.45797.K46abb250f0c81&page=45797&pagename={{FULLPAGENAMEE}}&type=&template=Evolution_homologs_table edit table] || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.45797.K46abb250f0c81-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.45797.K46abb250f0c81-->
{{Evolution_homologs_table_help}}
 


===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
Line 362: Line 363:
<!--
<!--
******************************************************************************************
******************************************************************************************
*
*  
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
*
*  
****************************************************************************************** -->
****************************************************************************************** -->{{Gene_accessions_help}}
{|class = 'sortable' {{Prettytable}} id='208490'
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" 
|- {{table_heading_style}}
|- {{table_heading_style}}
!Database!!Accession!!Notes
!|Database!!Accession!!Notes
|-
|-  
|
|
[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
|
|
[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00664 PFAM:PF00664]
[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00664 PFAM:PF00664]
|
|
   
   
|-class='sortbottom'
|-class='sortbottom'
|[{{SERVER}}{{SCRIPTPATH}}/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.45797.I46abb27f28ccf&page=45797&pagename={{FULLPAGENAMEE}} edit table] || ||
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.45797.I46abb27f28ccf&page=45797&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.45797.I46abb27f28ccf-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.45797.I46abb27f28ccf-->
{{Evolution_families_table_help}}
 
<protect><!--Families_notes--></protect>
<protect><!--Families_notes--></protect>
===Notes===
===Notes===
Line 390: Line 392:
<!--
<!--
******************************************************************************************
******************************************************************************************
*
*  
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
*
*  
****************************************************************************************** -->
****************************************************************************************** -->
{|class = 'sortable' {{Prettytable}} id='109853'
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" 
|- {{table_heading_style}}
|- {{table_heading_style}}
!Name!!URL!!Comments
!|Name!!URL!!Comments
 
|-class='sortbottom'
|-class='sortbottom'
|[{{SERVER}}{{SCRIPTPATH}}/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.45797.F46a7ff6665418&page=45797&pagename={{FULLPAGENAMEE}} edit table] || ||
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.45797.F46a7ff6665418&page=45797&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.45797.F46a7ff6665418-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.45797.F46a7ff6665418-->
{{Links_help}}
 


==References==
==References==
{{BacktoTop}}
{{BacktoTop}}
{{RefHelp}}
 
<references/>
<references/>
<noinclude>
<noinclude>

Revision as of 08:12, 6 February 2009

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000028387 (score: 1.000; bootstrap: 74%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000011902 (score: 1.000; bootstrap: 73%)
  • ENSAPMP00000035590 (score: 0.076)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT5G39040 (score: 1.000; bootstrap: 90%)
  • AT4G01830 (score: 0.088)
  • AT4G01820 (score: 0.085)
  • AT3G62150 (score: 0.084)
  • AT2G47000 (score: 0.080)
  • AT1G02520 (score: 0.080)
  • AT1G02530 (score: 0.071)
  • AT3G28860 (score: 0.050)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000007432 (score: 1.000; bootstrap: 87%)
  • ENSBTAP00000038269 (score: 0.382)
  • ENSBTAP00000003363 (score: 0.221)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00026762 (score: 1.000; bootstrap: 80%)
  • WBGene00028069 (score: 0.337)
  • WBGene00034271 (score: 0.334)
  • WBGene00037006 (score: 0.277)
  • WBGene00037005 (score: 0.269)
  • WBGene00023573 (score: 0.248)
  • WBGene00023577 (score: 0.243)
  • WBGene00023572 (score: 0.231)
  • WBGene00023575 (score: 0.231)
  • WBGene00037162 (score: 0.217)
  • WBGene00037161 (score: 0.212)
  • WBGene00033821 (score: 0.211)
  • WBGene00037165 (score: 0.175)
  • WBGene00032204 (score: 0.141)
  • WBGene00034135 (score: 0.137)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00003996 (score: 1.000; bootstrap: 81%)
  • WBGene00004003 (score: 0.330)
  • WBGene00003995 (score: 0.321)
  • WBGene00003997 (score: 0.279)
  • WBGene00003998 (score: 0.265)
  • WBGene00004008 (score: 0.245)
  • WBGene00004006 (score: 0.238)
  • WBGene00004007 (score: 0.222)
  • WBGene00004001 (score: 0.221)
  • WBGene00003999 (score: 0.220)
  • WBGene00004002 (score: 0.214)
  • WBGene00004009 (score: 0.212)
  • WBGene00004000 (score: 0.211)
  • WBGene00004005 (score: 0.148)
  • WBGene00004004 (score: 0.139)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000002684 (score: 1.000; bootstrap: 74%)
  • ENSCAFP00000002677 (score: 0.681)
  • ENSCAFP00000003871 (score: 0.488)
  • ENSCAFP00000017653 (score: 0.428)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000009257 (score: 1.000; bootstrap: 89%)
  • ENSCINP00000009176 (score: 0.717)
  • ENSCINP00000018552 (score: 0.484)
  • ENSCINP00000018541 (score: 0.460)
  • ENSCINP00000014551 (score: 0.333)
  • ENSCINP00000015244 (score: 0.329)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-050410-6 (score: 1.000; bootstrap: 99%)
  • ZDB-CDNA-050410-6 (score: 1.000; bootstrap: 99%)
  • ZDB-GENE-030616-225 (score: 0.059)
  • ZDB-GENE-030616-245 (score: 0.052)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0201666 (score: 1.000; bootstrap: 85%)
  • DDB0208540 (score: 0.099)
  • DDB0229852 (score: 0.064)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0010241 (score: 1.000; bootstrap: 59%)
  • FBgn0004512 (score: 0.307)
  • FBgn0004513 (score: 0.285)
  • FBgn0035695 (score: 0.255)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA21135-PA (score: 1.000; bootstrap: 57%)
  • GA17746-PA (score: 0.300)
  • GA10136-PA (score: 0.288)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000014477 (score: 1.000; bootstrap: 98%)
  • ENSGALP00000017711 (score: 0.512)
  • ENSGALP00000017690 (score: 0.419)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000265724 (score: 1.000; bootstrap: 87%)
  • ENSP00000265723 (score: 0.729)
  • ENSP00000263817 (score: 0.447)
  • ENSP00000258738 (score: 0.287)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000018185 (score: 1.000; bootstrap: 75%)
  • ENSMMUP00000014135 (score: 0.361)
  • ENSMMUP00000008900 (score: 0.344)
  • ENSMMUP00000010273 (score: 0.211)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000012733 (score: 1.000; bootstrap: 93%)
  • ENSMODP00000012812 (score: 0.798)
  • ENSMODP00000012716 (score: 0.697)
  • ENSMODP00000009711 (score: 0.431)

From Inparanoid:20070104

Mus musculus

  • MGI:97568 (score: 1.000; bootstrap: 85%)
  • MGI:97570 (score: 1.000; bootstrap: 86%)
  • MGI:97569 (score: 0.700)
  • MGI:1351619 (score: 0.417)

From Inparanoid:20070104

Oryza gramene

  • Q7FMW2 (score: 1.000; bootstrap: 76%)
  • Q5JLI1 (score: 0.706)
  • Q8GU71 (score: 0.704)
  • Q7FMW3 (score: 0.619)
  • Q5JLI4 (score: 0.605)
  • Q8RVT7 (score: 0.599)
  • Q8GU72 (score: 0.595)
  • Q8GU73 (score: 0.571)
  • Q6Z6U9 (score: 0.555)
  • Q9LGX1 (score: 0.541)
  • Q8GU69 (score: 0.534)
  • Q5N9P2 (score: 0.523)
  • Q8GU76 (score: 0.341)
  • Q8GU77 (score: 0.340)
  • Q8GU75 (score: 0.333)
  • Q7XUZ8 (score: 0.331)
  • Q6UC91 (score: 0.318)
  • Q7EZL2 (score: 0.314)
  • Q6YUU5 (score: 0.308)
  • Q8GU78 (score: 0.307)
  • Q6UNK5 (score: 0.298)
  • O23998 (score: 0.270)
  • Q8GU81 (score: 0.265)
  • Q7XUP9 (score: 0.265)
  • Q8GU74 (score: 0.264)
  • Q8GU68 (score: 0.258)
  • Q8GU67 (score: 0.250)
  • Q7EYH1 (score: 0.246)
  • Q8H7L0 (score: 0.236)
  • Q8GU79 (score: 0.235)
  • Q8GU80 (score: 0.223)
  • Q7EZL3 (score: 0.183)
  • Q9FSQ6 (score: 0.151)
  • Q7EZL1 (score: 0.114)
  • Q5KQM4 (score: 0.095)
  • Q6Z894 (score: 0.077)
  • Q5JN97 (score: 0.057)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000033133 (score: 1.000; bootstrap: 89%)
  • ENSPTRP00000045311 (score: 0.731)
  • ENSPTRP00000021540 (score: 0.274)
  • ENSPTRP00000032398 (score: 0.110)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000011166 (score: 1.000; bootstrap: 87%)
  • ENSRNOP00000038721 (score: 0.840)
  • ENSRNOP00000042556 (score: 0.705)
  • ENSRNOP00000045152 (score: 0.281)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YPL270W (score: 1.000; bootstrap: 74%)
  • YLR188W (score: 0.217)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPCC6633 (score: 1.000; bootstrap: 72%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000161094 (score: 1.000; bootstrap: 81%)
  • NEWSINFRUP00000161095 (score: 0.700)
  • NEWSINFRUP00000172828 (score: 0.412)
  • NEWSINFRUP00000182094 (score: 0.386)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00024825001 (score: 1.000; bootstrap: 80%)
  • GSTENP00034001001 (score: 0.370)
  • GSTENP00034000001 (score: 0.333)
  • GSTENP00034623001 (score: 0.254)
  • GSTENP00033999001 (score: 0.066)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000049177 (score: 1.000; bootstrap: 86%)

From Inparanoid:20070104

Shigella flexneri

MSBA

From SHIGELLACYC

E. coli O157

MSBA

From ECOO157CYC

edit table


Do-It-Yourself Web Tools


Notes

Families

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

PFAM (EcoliWiki Page)

PFAM:PF00664


edit table


Notes

Links

[back to top]


Name URL Comments
edit table


References

[back to top]




Categories

[back to top]


Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=msbA:Evolution&oldid=697265"