rpoC:Evolution: Difference between revisions

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!Organism!!Homologs (Statistics)!!Comments
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''Anopheles gambiae''   
''Anopheles gambiae''   
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''Apis mellifera''   
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''Arabidopsis thaliana''   
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''Bos taurus''   
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''Caenorhabditis briggsae''   
''Caenorhabditis briggsae''   
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''Caenorhabditis elegans''   
''Caenorhabditis elegans''   
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''Canis familiaris''   
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''Ciona intestinalis''   
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''Dictyostelium discoideum''   
''Dictyostelium discoideum''   
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''Drosophila melanogaster''   
''Drosophila melanogaster''   
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''Drosophila pseudoobscura''   
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''Gallus gallus''   
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''Macaca mulatta''   
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''Monodelphis domestica''   
''Monodelphis domestica''   
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''Mus musculus''   
''Mus musculus''   
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''Oryza gramene''   
''Oryza gramene''   
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''Pan troglodytes''   
''Pan troglodytes''   
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''Rattus norvegicus''   
''Rattus norvegicus''   
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''Saccharomyces cerevisiae''   
''Saccharomyces cerevisiae''   
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''Schizosaccharomyces pombe''   
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''Takifugu rubripes''   
''Takifugu rubripes''   
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''Tetraodon nigroviridis''   
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''Shigella flexneri''   
''Shigella flexneri''   
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{{Evolution_homologs_table_help}}
 


===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF04997 PFAM:PF04997]
[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF04997 PFAM:PF04997]
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<protect><!--Families_notes--></protect>
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===Notes===
===Notes===
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==References==
==References==
{{BacktoTop}}
{{BacktoTop}}
{{RefHelp}}
 
<references/>
<references/>
<noinclude>
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Revision as of 22:00, 21 January 2009

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000010305 (score: 1.000; bootstrap: 96%)
  • ENSANGP00000017502 (score: 0.117)
  • ENSANGP00000008667 (score: 0.060)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000028140 (score: 1.000; bootstrap: 100%)
  • ENSAPMP00000006261 (score: 0.180)
  • ENSAPMP00000025187 (score: 0.098)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT4G35800 (score: 1.000; bootstrap: 100%)
  • AT5G60040 (score: 0.119)
  • AT3G57660 (score: 0.079)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000013100 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000017638 (score: 0.114)
  • ENSBTAP00000008496 (score: 0.056)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00027817 (score: 1.000; bootstrap: 100%)
  • WBGene00028171 (score: 0.132)
  • WBGene00039661 (score: 0.080)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00000123 (score: 1.000; bootstrap: 100%)
  • WBGene00004411 (score: 0.132)
  • WBGene00012999 (score: 0.077)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000024423 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000022912 (score: 0.118)
  • ENSCAFP00000011333 (score: 0.071)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000016160 (score: 1.000; bootstrap: 100%)
  • ENSCINP00000018127 (score: 0.126)
  • ENSCINP00000015751 (score: 0.064)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0215406 (score: 1.000; bootstrap: 100%)
  • DDB0216293 (score: 0.156)
  • DDB0216292 (score: 0.103)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0003277 (score: 1.000; bootstrap: 100%)
  • FBgn0019938 (score: 0.084)
  • FBgn0030687 (score: 0.080)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA13798-PA (score: 1.000; bootstrap: 100%)
  • GA10089-PA (score: 0.078)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000007915 (score: 1.000; bootstrap: 100%)
  • ENSGALP00000025378 (score: 0.087)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000314949 (score: 1.000; bootstrap: 100%)
  • ENSP00000277783 (score: 0.121)
  • ENSP00000263857 (score: 0.055)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000007294 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000031094 (score: 0.118)
  • ENSMMUP00000020791 (score: 0.100)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000008691 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000001232 (score: 0.132)
  • ENSMODP00000011668 (score: 0.072)

From Inparanoid:20070104

Mus musculus

  • MGI:98086 (score: 1.000; bootstrap: 100%)
  • MGI:1096397 (score: 0.064)

From Inparanoid:20070104

Oryza gramene

  • P16024 (score: 1.000; bootstrap: 99%)
  • Q9XPS8 (score: 1.000; bootstrap: 99%)
  • Q6L3A6 (score: 0.992)
  • Q6ENX2 (score: 0.992)
  • Q6QY82 (score: 0.937)
  • Q6QY19 (score: 0.937)
  • P12092 (score: 0.937)
  • Q6ENI3 (score: 0.937)
  • Q8S1Q5 (score: 0.937)
  • Q6Z1U9 (score: 0.936)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000014817 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000046047 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000013587 (score: 0.065)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YDL140C (score: 1.000; bootstrap: 100%)
  • YOR116C (score: 0.135)
  • YOR341W (score: 0.077)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPBC28F22 (score: 1.000; bootstrap: 100%)
  • SPBC6518c (score: 0.130)
  • SPBC4C35c (score: 0.086)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000158879 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000174091 (score: 0.136)
  • NEWSINFRUP00000157438 (score: 0.076)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00019215001 (score: 1.000; bootstrap: 100%)
  • GSTENP00024646001 (score: 0.117)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000009649 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

RPOC

From SHIGELLACYC

E. coli O157

RPOC

From ECOO157CYC

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

PFAM (EcoliWiki Page)

PFAM:PF04997


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Notes

Links

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Name URL Comments
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References

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Categories

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