ndh:Evolution: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older editNewer edit →
Edited by wikibot
imported>Wikientrybot
Move help links into the <above> tag inside templates.
Line 25: Line 25:
<!--
<!--
******************************************************************************************
******************************************************************************************
*
*  
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
*
*  
****************************************************************************************** -->
****************************************************************************************** -->{{Evolution_homologs_table_help}}
{|class = 'sortable' {{Prettytable}} id='208827'
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" 
|- {{table heading style}}
|- {{table heading style}}
!Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
|-
|-  
|
|
''Arabidopsis thaliana''   
''Arabidopsis thaliana''   
Line 44: Line 44:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Caenorhabditis briggsae''   
''Caenorhabditis briggsae''   
Line 52: Line 52:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Ciona intestinalis''   
''Ciona intestinalis''   
Line 59: Line 59:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Dictyostelium discoideum''   
''Dictyostelium discoideum''   
Line 70: Line 70:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Gallus gallus''   
''Gallus gallus''   
Line 77: Line 77:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Monodelphis domestica''   
''Monodelphis domestica''   
Line 84: Line 84:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Oryza gramene''   
''Oryza gramene''   
Line 95: Line 95:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Saccharomyces cerevisiae''   
''Saccharomyces cerevisiae''   
Line 104: Line 104:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Schizosaccharomyces pombe''   
''Schizosaccharomyces pombe''   
Line 112: Line 112:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Takifugu rubripes''   
''Takifugu rubripes''   
Line 119: Line 119:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Tetraodon nigroviridis''   
''Tetraodon nigroviridis''   
Line 126: Line 126:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Shigella flexneri''   
''Shigella flexneri''   
Line 133: Line 133:
|
|
From SHIGELLACYC  
From SHIGELLACYC  
|-
|-  
|
|
''E. coli'' O157  
''E. coli'' O157  
Line 140: Line 140:
|
|
From ECOO157CYC  
From ECOO157CYC  
|-class='sortbottom'
|-class='sortbottom'
|[{{SERVER}}{{SCRIPTPATH}}/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.46177.P46abb77d5fc59&page=46177&pagename={{FULLPAGENAMEE}} edit table] || ||
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.46177.P46abb77d5fc59&page=46177&pagename={{FULLPAGENAMEE}}&type=&template=Evolution_homologs_table edit table] || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.46177.P46abb77d5fc59-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.46177.P46abb77d5fc59-->
{{Evolution_homologs_table_help}}
 


===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
Line 161: Line 162:
<!--
<!--
******************************************************************************************
******************************************************************************************
*
*  
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
*
*  
****************************************************************************************** -->
****************************************************************************************** -->{{Gene_accessions_help}}
{|class = 'sortable' {{Prettytable}} id='208828'
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" 
|- {{table_heading_style}}
|- {{table_heading_style}}
!Database!!Accession!!Notes
!|Database!!Accession!!Notes
|-
|-  
|
|
[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
|
|
[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00070 PFAM:PF00070]
[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00070 PFAM:PF00070]
|
|
   
   
|-class='sortbottom'
|-class='sortbottom'
|[{{SERVER}}{{SCRIPTPATH}}/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.46177.T46abb78c059ae&page=46177&pagename={{FULLPAGENAMEE}} edit table] || ||
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.46177.T46abb78c059ae&page=46177&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.46177.T46abb78c059ae-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.46177.T46abb78c059ae-->
{{Evolution_families_table_help}}
 
<protect><!--Families_notes--></protect>
<protect><!--Families_notes--></protect>
===Notes===
===Notes===
Line 189: Line 191:
<!--
<!--
******************************************************************************************
******************************************************************************************
*
*  
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
*
*  
****************************************************************************************** -->
****************************************************************************************** -->
{|class = 'sortable' {{Prettytable}} id='110316'
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" 
|- {{table_heading_style}}
|- {{table_heading_style}}
!Name!!URL!!Comments
!|Name!!URL!!Comments
 
|-class='sortbottom'
|-class='sortbottom'
|[{{SERVER}}{{SCRIPTPATH}}/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.46177.Y46a8037e8b322&page=46177&pagename={{FULLPAGENAMEE}} edit table] || ||
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.46177.Y46a8037e8b322&page=46177&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.46177.Y46a8037e8b322-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.46177.Y46a8037e8b322-->
{{Links_help}}
 


==References==
==References==
{{BacktoTop}}
{{BacktoTop}}
{{RefHelp}}
 
<references/>
<references/>
<noinclude>
<noinclude>

Revision as of 21:47, 21 January 2009

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Arabidopsis thaliana

  • AT2G29990 (score: 1.000; bootstrap: 60%)
  • AT1G07180 (score: 0.808)
  • AT4G05020 (score: 0.194)
  • AT4G28220 (score: 0.194)
  • AT2G20800 (score: 0.178)
  • AT4G21490 (score: 0.127)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00038111 (score: 1.000; bootstrap: 100%)
  • WBGene00038112 (score: 0.752)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000012973 (score: 1.000; bootstrap: 89%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0190805 (score: 1.000; bootstrap: 81%)
  • DDB0188774 (score: 0.232)
  • DDB0168392 (score: 0.195)
  • DDB0190809 (score: 0.171)
  • DDB0201952 (score: 0.126)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000007614 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000015274 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Oryza gramene

  • Q5W745 (score: 1.000; bootstrap: 57%)
  • Q655G1 (score: 1.000; bootstrap: 59%)
  • Q6YZ09 (score: 0.332)
  • Q8H5X6 (score: 0.182)
  • Q5QLT6 (score: 0.112)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YDL085W (score: 1.000; bootstrap: 100%)
  • YMR145C (score: 0.550)
  • YML120C (score: 0.280)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPBC9475c (score: 1.000; bootstrap: 100%)
  • SPAC3A117 (score: 0.304)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000158126 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00025004001 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

NDH

From SHIGELLACYC

E. coli O157

NDH

From ECOO157CYC

edit table


Do-It-Yourself Web Tools


Notes

Families

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

PFAM (EcoliWiki Page)

PFAM:PF00070


edit table


Notes

Links

[back to top]


Name URL Comments
edit table


References

[back to top]




Categories

[back to top]


Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=ndh:Evolution&oldid=651702"