ybeQ:Evolution: Difference between revisions

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!Organism!!Homologs (Statistics)!!Comments
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''Anopheles gambiae''   
''Anopheles gambiae''   
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''Apis mellifera''   
''Apis mellifera''   
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''Arabidopsis thaliana''   
''Arabidopsis thaliana''   
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''Bos taurus''   
''Bos taurus''   
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''Caenorhabditis briggsae''   
''Caenorhabditis briggsae''   
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''Caenorhabditis elegans''   
''Caenorhabditis elegans''   
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''Canis familiaris''   
''Canis familiaris''   
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''Ciona intestinalis''   
''Ciona intestinalis''   
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''Danio rerio''   
''Danio rerio''   
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''Dictyostelium discoideum''   
''Dictyostelium discoideum''   
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''Drosophila melanogaster''   
''Drosophila melanogaster''   
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''Drosophila pseudoobscura''   
''Drosophila pseudoobscura''   
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''Gallus gallus''   
''Gallus gallus''   
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''Homo sapiens''   
''Homo sapiens''   
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''Macaca mulatta''   
''Macaca mulatta''   
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''Monodelphis domestica''   
''Monodelphis domestica''   
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''Mus musculus''   
''Mus musculus''   
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''Oryza gramene''   
''Oryza gramene''   
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''Pan troglodytes''   
''Pan troglodytes''   
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''Rattus norvegicus''   
''Rattus norvegicus''   
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''Saccharomyces cerevisiae''   
''Saccharomyces cerevisiae''   
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''Schizosaccharomyces pombe''   
''Schizosaccharomyces pombe''   
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''Takifugu rubripes''   
''Takifugu rubripes''   
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''Tetraodon nigroviridis''   
''Tetraodon nigroviridis''   
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''Xenopus tropicalis''   
''Xenopus tropicalis''   
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''Shigella flexneri''   
''Shigella flexneri''   
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From SHIGELLACYC  
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''E. coli'' O157  
''E. coli'' O157  
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From ECOO157CYC  
From ECOO157CYC  
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|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.45261.W46aba842a0ec9&page=45261&pagename={{FULLPAGENAMEE}}&type=&template=Evolution_homologs_table edit table] || ||
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{{Evolution_homologs_table_help}}
===Do-It-Yourself Web Tools===
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_415177&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
<protect><!--Homology_notes--></protect>
===Notes===


==Families==
{{BacktoTop}}
<!--box uid=421aa90e079fa326b6494f812ad13e79.45261.W46aba842a0ec9-->
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{|class = 'sortable' {{Prettytable}} id='208033'
|- {{table heading style}}
!Organism!!Homologs (Statistics)!!Comments
|-
|
''Anopheles gambiae'' 
|
* ENSANGP00000019196 (score: 1.000; bootstrap: 100%)
|
From Inparanoid:20070104
|-
|
''Apis mellifera'' 
|
* ENSAPMP00000032810 (score: 1.000; bootstrap: 99%)
|
From Inparanoid:20070104
|-
|
''Arabidopsis thaliana'' 
|
* AT1G18260 (score: 1.000; bootstrap: 84%)
* AT1G73570 (score: 0.682)
|
From Inparanoid:20070104
|-
|
''Bos taurus'' 
|
* ENSBTAP00000010628 (score: 1.000; bootstrap: 91%)
* ENSBTAP00000026798 (score: 0.457)
|
From Inparanoid:20070104
|-
|
''Caenorhabditis briggsae'' 
|
* WBGene00041866 (score: 1.000; bootstrap: 100%)
|
From Inparanoid:20070104
|-
|
''Caenorhabditis elegans'' 
|
* WBGene00004759 (score: 1.000; bootstrap: 100%)
|
From Inparanoid:20070104
|-
|
''Canis familiaris'' 
|
* ENSCAFP00000025521 (score: 1.000; bootstrap: 91%)
* ENSCAFP00000008314 (score: 0.356)
|
From Inparanoid:20070104
|-
|
''Ciona intestinalis'' 
|
* ENSCINP00000014215 (score: 1.000; bootstrap: 100%)
|
From Inparanoid:20070104
|-
|
''Danio rerio'' 
|
* ZDB-GENE-041001-122 (score: 1.000; bootstrap: 100%)
|
From Inparanoid:20070104
|-
|
''Dictyostelium discoideum'' 
|
* DDB0190258 (score: 1.000; bootstrap: 76%)
* DDB0190259 (score: 0.389)
|
From Inparanoid:20070104
|-
|
''Drosophila melanogaster'' 
|
* FBgn0028475 (score: 1.000; bootstrap: 100%)
|
From Inparanoid:20070104
|-
|
''Drosophila pseudoobscura'' 
|
* GA10167-PA (score: 1.000; bootstrap: 100%)
|
From Inparanoid:20070104
|-
|
''Gallus gallus'' 
|
* ENSGALP00000017201 (score: 1.000; bootstrap: 95%)
|
From Inparanoid:20070104
|-
|
''Homo sapiens'' 
|
* ENSP00000337053 (score: 1.000; bootstrap: 91%)
* ENSP00000284951 (score: 0.327)
|
From Inparanoid:20070104
|-
|
''Macaca mulatta'' 
|
* ENSMMUP00000013095 (score: 1.000; bootstrap: 91%)
* ENSMMUP00000002941 (score: 0.297)
|
From Inparanoid:20070104
|-
|
''Monodelphis domestica'' 
|
* ENSMODP00000004548 (score: 1.000; bootstrap: 87%)
* ENSMODP00000006431 (score: 0.311)
|
From Inparanoid:20070104
|-
|
''Mus musculus'' 
|
* MGI:1329016 (score: 1.000; bootstrap: 93%)
* MGI:2684964 (score: 0.354)
|
From Inparanoid:20070104
|-
|
''Oryza gramene'' 
|
* Q7XKU0 (score: 1.000; bootstrap: 100%)
|
From Inparanoid:20070104
|-
|
''Pan troglodytes'' 
|
* ENSPTRP00000011221 (score: 1.000; bootstrap: 91%)
* ENSPTRP00000040464 (score: 0.323)
|
From Inparanoid:20070104
|-
|
''Rattus norvegicus'' 
|
* ENSRNOP00000036379 (score: 1.000; bootstrap: 91%)
* ENSRNOP00000006143 (score: 0.458)
|
From Inparanoid:20070104
|-
|
''Saccharomyces cerevisiae'' 
|
* YBL061C (score: 1.000; bootstrap: 100%)
* YER096W (score: 0.149)
|
From Inparanoid:20070104
|-
|
''Schizosaccharomyces pombe'' 
|
* SPAC24B110c (score: 1.000; bootstrap: 49%)
|
From Inparanoid:20070104
|-
|
''Takifugu rubripes'' 
|
* NEWSINFRUP00000140353 (score: 1.000; bootstrap: 80%)
|
From Inparanoid:20070104
|-
|
''Tetraodon nigroviridis'' 
|
* GSTENP00026546001 (score: 1.000; bootstrap: 57%)
|
From Inparanoid:20070104
|-
|
''Xenopus tropicalis'' 
|
* ENSXETP00000013946 (score: 1.000; bootstrap: 52%)
|
From Inparanoid:20070104
|-
|
''Shigella flexneri'' 
|
YBEQ
|
From SHIGELLACYC
|-
|
''E. coli'' O157
|
YBEQ
|
From ECOO157CYC
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{{Evolution_families_table_help}}
<protect><!--Families_notes--></protect>
<protect><!--Families_notes--></protect>
===Notes===
===Notes===
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!|Name!!URL!!Comments
 
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==References==
==References==
{{BacktoTop}}
{{BacktoTop}}
{{RefHelp}}
 
<references/>
<references/>
<noinclude>
<noinclude>

Revision as of 21:45, 21 January 2009

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000019196 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000032810 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT1G18260 (score: 1.000; bootstrap: 84%)
  • AT1G73570 (score: 0.682)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000010628 (score: 1.000; bootstrap: 91%)
  • ENSBTAP00000026798 (score: 0.457)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00041866 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00004759 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000025521 (score: 1.000; bootstrap: 91%)
  • ENSCAFP00000008314 (score: 0.356)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000014215 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-041001-122 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0190258 (score: 1.000; bootstrap: 76%)
  • DDB0190259 (score: 0.389)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0028475 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA10167-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000017201 (score: 1.000; bootstrap: 95%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000337053 (score: 1.000; bootstrap: 91%)
  • ENSP00000284951 (score: 0.327)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000013095 (score: 1.000; bootstrap: 91%)
  • ENSMMUP00000002941 (score: 0.297)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000004548 (score: 1.000; bootstrap: 87%)
  • ENSMODP00000006431 (score: 0.311)

From Inparanoid:20070104

Mus musculus

  • MGI:1329016 (score: 1.000; bootstrap: 93%)
  • MGI:2684964 (score: 0.354)

From Inparanoid:20070104

Oryza gramene

  • Q7XKU0 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000011221 (score: 1.000; bootstrap: 91%)
  • ENSPTRP00000040464 (score: 0.323)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000036379 (score: 1.000; bootstrap: 91%)
  • ENSRNOP00000006143 (score: 0.458)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YBL061C (score: 1.000; bootstrap: 100%)
  • YER096W (score: 0.149)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPAC24B110c (score: 1.000; bootstrap: 49%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000140353 (score: 1.000; bootstrap: 80%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00026546001 (score: 1.000; bootstrap: 57%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000013946 (score: 1.000; bootstrap: 52%)

From Inparanoid:20070104

Shigella flexneri

YBEQ

From SHIGELLACYC

E. coli O157

YBEQ

From ECOO157CYC

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Notes

Links

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Name URL Comments
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References

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Categories

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