ynbC:Evolution: Difference between revisions

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*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_415928&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_415928&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


Revision as of 07:03, 14 November 2007

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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Organism Homologs (Statistics) Comments

Arabidopsis thaliana

  • AT5G11650 (score: 1.000; bootstrap: 100%)
  • AT1G73480 (score: 0.442)
  • AT1G18360 (score: 0.395)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000006072 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000009619 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000265052 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000009893 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Mus musculus

  • MGI:1346042 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Oryza gramene

  • Q4VWY7 (score: 1.000; bootstrap: 100%)
  • Q6H452 (score: 0.416)
  • O49147 (score: 0.411)
  • Q6ASW1 (score: 0.367)
  • Q8LLN8 (score: 0.274)
  • Q8H4S9 (score: 0.083)
  • Q94D81 (score: 0.066)
  • Q5N7L1 (score: 0.050)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000019853 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPCC5E45c (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

S1466

From SHIGELLACYC

E. coli O157

Z2317

From ECOO157CYC

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Do-It-Yourself Web Tools


Notes

Families

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Organism Homologs (Statistics) Comments

Arabidopsis thaliana

  • AT5G11650 (score: 1.000; bootstrap: 100%)
  • AT1G73480 (score: 0.442)
  • AT1G18360 (score: 0.395)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000006072 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000009619 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000265052 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000009893 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Mus musculus

  • MGI:1346042 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Oryza gramene

  • Q4VWY7 (score: 1.000; bootstrap: 100%)
  • Q6H452 (score: 0.416)
  • O49147 (score: 0.411)
  • Q6ASW1 (score: 0.367)
  • Q8LLN8 (score: 0.274)
  • Q8H4S9 (score: 0.083)
  • Q94D81 (score: 0.066)
  • Q5N7L1 (score: 0.050)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000019853 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPCC5E45c (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

S1466

From SHIGELLACYC

E. coli O157

Z2317

From ECOO157CYC

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See Help:Evolution_families for help entering or editing information in this section of EcoliWiki.

Notes

Links

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Name URL Comments
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References

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Categories

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