ybeQ:Evolution: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older editNewer edit →
imported>WikiEntryBot
Automated import of articles
Edited by wikibot
Line 241: Line 241:
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_415177&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_415177&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


Revision as of 07:00, 14 November 2007

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000019196 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000032810 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT1G18260 (score: 1.000; bootstrap: 84%)
  • AT1G73570 (score: 0.682)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000010628 (score: 1.000; bootstrap: 91%)
  • ENSBTAP00000026798 (score: 0.457)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00041866 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00004759 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000025521 (score: 1.000; bootstrap: 91%)
  • ENSCAFP00000008314 (score: 0.356)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000014215 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-041001-122 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0190258 (score: 1.000; bootstrap: 76%)
  • DDB0190259 (score: 0.389)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0028475 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA10167-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000017201 (score: 1.000; bootstrap: 95%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000337053 (score: 1.000; bootstrap: 91%)
  • ENSP00000284951 (score: 0.327)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000013095 (score: 1.000; bootstrap: 91%)
  • ENSMMUP00000002941 (score: 0.297)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000004548 (score: 1.000; bootstrap: 87%)
  • ENSMODP00000006431 (score: 0.311)

From Inparanoid:20070104

Mus musculus

  • MGI:1329016 (score: 1.000; bootstrap: 93%)
  • MGI:2684964 (score: 0.354)

From Inparanoid:20070104

Oryza gramene

  • Q7XKU0 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000011221 (score: 1.000; bootstrap: 91%)
  • ENSPTRP00000040464 (score: 0.323)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000036379 (score: 1.000; bootstrap: 91%)
  • ENSRNOP00000006143 (score: 0.458)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YBL061C (score: 1.000; bootstrap: 100%)
  • YER096W (score: 0.149)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPAC24B110c (score: 1.000; bootstrap: 49%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000140353 (score: 1.000; bootstrap: 80%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00026546001 (score: 1.000; bootstrap: 57%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000013946 (score: 1.000; bootstrap: 52%)

From Inparanoid:20070104

Shigella flexneri

YBEQ

From SHIGELLACYC

E. coli O157

YBEQ

From ECOO157CYC

edit table

See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Do-It-Yourself Web Tools


Notes

Families

[back to top]


Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000019196 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000032810 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT1G18260 (score: 1.000; bootstrap: 84%)
  • AT1G73570 (score: 0.682)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000010628 (score: 1.000; bootstrap: 91%)
  • ENSBTAP00000026798 (score: 0.457)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00041866 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00004759 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000025521 (score: 1.000; bootstrap: 91%)
  • ENSCAFP00000008314 (score: 0.356)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000014215 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-041001-122 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0190258 (score: 1.000; bootstrap: 76%)
  • DDB0190259 (score: 0.389)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0028475 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA10167-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000017201 (score: 1.000; bootstrap: 95%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000337053 (score: 1.000; bootstrap: 91%)
  • ENSP00000284951 (score: 0.327)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000013095 (score: 1.000; bootstrap: 91%)
  • ENSMMUP00000002941 (score: 0.297)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000004548 (score: 1.000; bootstrap: 87%)
  • ENSMODP00000006431 (score: 0.311)

From Inparanoid:20070104

Mus musculus

  • MGI:1329016 (score: 1.000; bootstrap: 93%)
  • MGI:2684964 (score: 0.354)

From Inparanoid:20070104

Oryza gramene

  • Q7XKU0 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000011221 (score: 1.000; bootstrap: 91%)
  • ENSPTRP00000040464 (score: 0.323)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000036379 (score: 1.000; bootstrap: 91%)
  • ENSRNOP00000006143 (score: 0.458)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YBL061C (score: 1.000; bootstrap: 100%)
  • YER096W (score: 0.149)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPAC24B110c (score: 1.000; bootstrap: 49%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000140353 (score: 1.000; bootstrap: 80%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00026546001 (score: 1.000; bootstrap: 57%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000013946 (score: 1.000; bootstrap: 52%)

From Inparanoid:20070104

Shigella flexneri

YBEQ

From SHIGELLACYC

E. coli O157

YBEQ

From ECOO157CYC

edit table

See Help:Evolution_families for help entering or editing information in this section of EcoliWiki.

Notes

Links

[back to top]


Name URL Comments
edit table

See Help:Links_table for how to enter or edit information in this section of EcoliWiki.

References

[back to top]


See Help:References for how to manage references in EcoliWiki.



Categories

[back to top]


Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=ybeQ:Evolution&oldid=325781"